Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GsYM18_RS15195 | Genome accession | NZ_AP017912 |
| Coordinates | 3305234..3305674 (+) | Length | 146 a.a. |
| NCBI ID | WP_010943738.1 | Uniprot ID | Q747Z8 |
| Organism | Geobacter sulfurreducens strain YM18 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3300234..3310674
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GsYM18_RS15175 (YM18_3001) | - | 3301969..3303654 (-) | 1686 | WP_119333692.1 | ribonuclease J | - |
| GsYM18_RS15180 (YM18_3002) | - | 3303661..3304062 (-) | 402 | WP_119333693.1 | hypothetical protein | - |
| GsYM18_RS15185 (YM18_3003) | - | 3304069..3304248 (-) | 180 | WP_119333694.1 | hypothetical protein | - |
| GsYM18_RS15190 (YM18_3004) | - | 3304250..3304954 (-) | 705 | WP_119333695.1 | lysophospholipid acyltransferase family protein | - |
| GsYM18_RS15195 (YM18_3005) | ssb | 3305234..3305674 (+) | 441 | WP_010943738.1 | single-stranded DNA-binding protein | Machinery gene |
| GsYM18_RS15200 (YM18_3006) | - | 3305775..3306683 (-) | 909 | WP_119333696.1 | transporter | - |
| GsYM18_RS15205 (YM18_3007) | dsbI | 3307030..3307734 (-) | 705 | WP_119333697.1 | protein-disulfide oxidoreductase DsbI | - |
| GsYM18_RS15210 (YM18_3008) | - | 3307746..3308411 (-) | 666 | WP_119333698.1 | thiol:disulfide interchange protein DsbA/DsbL | - |
| GsYM18_RS15215 (YM18_3009) | - | 3308515..3310323 (-) | 1809 | WP_119333699.1 | aryl-sulfate sulfotransferase | - |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 16028.82 Da Isoelectric Point: 5.3353
>NTDB_id=68473 GsYM18_RS15195 WP_010943738.1 3305234..3305674(+) (ssb) [Geobacter sulfurreducens strain YM18]
MASLNKVMLIGNLGKDPEVRYTPAGTAVASFSLATTEKFKNRNGEFEEKTEWHNVVLWGRQAEIAGEYLAKGRTVFIEGR
LQTRKWQDKDGRDRWTTEVVGERMQMLGGKGEGGGGRAGGRGGQESGFGGPSYDEPAFNPDDDIPF
MASLNKVMLIGNLGKDPEVRYTPAGTAVASFSLATTEKFKNRNGEFEEKTEWHNVVLWGRQAEIAGEYLAKGRTVFIEGR
LQTRKWQDKDGRDRWTTEVVGERMQMLGGKGEGGGGRAGGRGGQESGFGGPSYDEPAFNPDDDIPF
Nucleotide
Download Length: 441 bp
>NTDB_id=68473 GsYM18_RS15195 WP_010943738.1 3305234..3305674(+) (ssb) [Geobacter sulfurreducens strain YM18]
ATGGCCAGTCTCAACAAAGTGATGCTCATCGGCAATCTCGGGAAGGATCCCGAGGTTCGCTACACGCCTGCCGGCACGGC
AGTTGCCAGCTTCTCCCTTGCCACCACCGAAAAATTCAAGAACAGGAACGGCGAATTCGAGGAAAAGACCGAATGGCACA
ATGTGGTCCTCTGGGGCCGCCAGGCCGAAATCGCCGGTGAATACCTGGCCAAAGGGCGGACCGTTTTCATCGAGGGGCGA
CTCCAGACCCGCAAGTGGCAGGACAAGGATGGCCGTGACCGCTGGACCACCGAGGTGGTGGGCGAGCGGATGCAGATGCT
CGGCGGCAAGGGCGAGGGAGGCGGCGGGCGCGCAGGCGGGCGCGGCGGCCAGGAGAGCGGCTTCGGCGGCCCCTCCTATG
ACGAGCCGGCCTTCAATCCGGATGATGACATTCCGTTCTGA
ATGGCCAGTCTCAACAAAGTGATGCTCATCGGCAATCTCGGGAAGGATCCCGAGGTTCGCTACACGCCTGCCGGCACGGC
AGTTGCCAGCTTCTCCCTTGCCACCACCGAAAAATTCAAGAACAGGAACGGCGAATTCGAGGAAAAGACCGAATGGCACA
ATGTGGTCCTCTGGGGCCGCCAGGCCGAAATCGCCGGTGAATACCTGGCCAAAGGGCGGACCGTTTTCATCGAGGGGCGA
CTCCAGACCCGCAAGTGGCAGGACAAGGATGGCCGTGACCGCTGGACCACCGAGGTGGTGGGCGAGCGGATGCAGATGCT
CGGCGGCAAGGGCGAGGGAGGCGGCGGGCGCGCAGGCGGGCGCGGCGGCCAGGAGAGCGGCTTCGGCGGCCCCTCCTATG
ACGAGCCGGCCTTCAATCCGGATGATGACATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
49.153 |
100 |
0.596 |
| ssb | Neisseria meningitidis MC58 |
45.665 |
100 |
0.541 |
| ssb | Neisseria gonorrhoeae MS11 |
45.665 |
100 |
0.541 |
| ssb | Glaesserella parasuis strain SC1401 |
42.222 |
100 |
0.521 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
32.749 |
100 |
0.384 |