Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SNAG_RS08190 Genome accession   NZ_AP017652
Coordinates   1593724..1595682 (-) Length   652 a.a.
NCBI ID   WP_096408324.1    Uniprot ID   -
Organism   Streptococcus sp. NPS 308     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588724..1600682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS08165 (SNAG_1600) - 1589259..1589894 (-) 636 WP_231906666.1 sugar transferase -
  SNAG_RS08170 (SNAG_1601) - 1589949..1590641 (-) 693 WP_061408034.1 tyrosine-protein kinase -
  SNAG_RS08175 (SNAG_1602) cpsC 1590651..1591343 (-) 693 WP_096408316.1 capsular polysaccharide biosynthesis protein CpsC -
  SNAG_RS08180 (SNAG_1603) cps4B 1591352..1592083 (-) 732 WP_096408319.1 capsular polysaccharide biosynthesis protein Cps4B -
  SNAG_RS08185 (SNAG_1604) - 1592085..1593530 (-) 1446 WP_096408321.1 LCP family protein -
  SNAG_RS08190 (SNAG_1605) amiA3 1593724..1595682 (-) 1959 WP_096408324.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS08195 (SNAG_1606) amiA 1595838..1597805 (-) 1968 WP_096408326.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS08200 (SNAG_1607) - 1597974..1599584 (-) 1611 WP_096408329.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72964.18 Da        Isoelectric Point: 4.7906

>NTDB_id=68366 SNAG_RS08190 WP_096408324.1 1593724..1595682(-) (amiA3) [Streptococcus sp. NPS 308]
MNMKKRLIGTGLVLATGILLTACGQSNTDTSTFSSTFSANPTTFNYLLDYYADNTSVITNLVDGLLENDSYGNLTPALAE
DWSVSADGLTYTYKLRKDAKWYTADGEEYAPVKAQDFVTGIKYAADNKGQAMDLVQNSIKGLNDYVTGATNDFTTVGVKA
LDDYTVEYTLTRPEPYWNSKTTNSILFPVNEEFLKSKDKEFGTLTPNSILYNGPYLLKDFTSKSSIEYVKNPNYYDHEKV
TIEKVKLAYFDGSDQEMTIRNFESGAYTLAGVYPNSSSYAKTKEKYQDNIVYSLQDKTSWYFNFNVNRKAYNHTAKTTDE
QKKSTQTAILNKNFRQALNFAIDRTAYSAQSNGQEAASKTLRNTLVPPTFVQVGDKSFGEVVSSKLVQYGTEWSGINLAD
AQDGYFNKEKAQAKFAEAKKELEAQGVTFPIHLDIPVDQTNKNAVSGMNSVKQTLETVLGSDNVVIDVQQLSTDEFGNVA
FLAPNPAARDYDLNFDGWVGDYQDPSTYLDPFNAEDGFYLKIFGLDAKEDQELIKSLGLDTYTKLLKEADTENQDVAKRY
EKYAEAQAWMIDSSLIMSTMSNGGTASVTKVTPFTRAYSLVGIKGDGNNYKYMRLQKDPVTKKQFDEAKAKWEEESKKAI
EKSQKEFSNHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=68366 SNAG_RS08190 WP_096408324.1 1593724..1595682(-) (amiA3) [Streptococcus sp. NPS 308]
ATGAACATGAAAAAAAGACTCATCGGAACTGGTCTTGTCCTAGCTACAGGGATTTTACTGACAGCTTGTGGACAGTCAAA
TACTGATACAAGCACTTTCTCATCAACATTTAGTGCAAATCCGACGACATTTAACTATCTTTTAGACTATTATGCAGATA
ACACTTCAGTGATTACCAATCTTGTGGATGGTTTGTTAGAAAATGATAGCTATGGGAATCTAACGCCAGCTCTAGCTGAA
GATTGGTCAGTTTCGGCGGATGGTTTAACCTATACTTATAAACTCAGAAAAGACGCCAAGTGGTACACTGCTGATGGAGA
AGAGTACGCTCCAGTCAAAGCCCAGGACTTTGTCACTGGGATTAAGTATGCTGCGGATAACAAGGGTCAAGCCATGGATC
TCGTCCAAAACTCTATCAAGGGATTGAATGACTATGTGACAGGTGCGACCAATGACTTCACAACAGTTGGTGTGAAAGCC
TTGGATGACTATACGGTTGAGTACACTTTGACTCGACCAGAGCCATACTGGAACTCAAAGACCACCAATAGTATCCTTTT
CCCGGTTAACGAAGAGTTTTTGAAATCAAAGGATAAAGAATTTGGAACCTTGACGCCAAACAGCATCCTTTACAATGGAC
CTTACTTGTTAAAAGATTTCACATCAAAATCTTCAATCGAGTATGTGAAGAATCCTAACTACTATGATCATGAGAAAGTC
ACCATTGAGAAAGTTAAATTGGCTTACTTTGATGGCTCTGATCAGGAGATGACCATTCGAAACTTTGAAAGTGGCGCCTA
TACGCTTGCGGGAGTCTATCCAAATAGCTCGAGCTATGCCAAGACAAAAGAAAAATACCAAGACAATATCGTTTATAGCT
TGCAAGACAAGACTTCTTGGTACTTCAACTTTAATGTAAACCGTAAAGCCTATAACCATACTGCAAAAACGACGGATGAG
CAAAAGAAATCAACGCAAACAGCGATTTTAAATAAAAATTTCCGTCAGGCCTTGAACTTTGCCATCGATCGGACAGCCTA
TTCTGCTCAATCTAACGGGCAAGAAGCAGCAAGTAAGACCCTTCGTAATACCCTTGTTCCCCCGACATTTGTGCAGGTGG
GAGATAAGAGCTTTGGAGAAGTCGTTTCTTCTAAACTTGTTCAGTATGGAACAGAGTGGTCAGGAATCAACTTGGCGGAT
GCCCAAGACGGTTATTTCAACAAGGAAAAAGCTCAAGCCAAATTTGCGGAAGCTAAAAAGGAATTGGAAGCCCAAGGGGT
GACCTTCCCGATTCATTTGGACATCCCAGTTGATCAAACCAATAAAAATGCGGTTTCAGGTATGAATTCGGTTAAACAAA
CACTTGAAACAGTACTAGGTTCTGATAATGTCGTTATTGATGTTCAGCAACTTTCAACGGATGAATTTGGGAATGTTGCT
TTCCTAGCACCAAATCCAGCAGCTCGTGACTACGACCTAAACTTTGATGGCTGGGTTGGTGATTACCAAGATCCGTCAAC
TTATCTGGATCCATTTAATGCCGAAGATGGTTTTTATCTCAAAATTTTCGGTCTAGATGCTAAGGAAGATCAAGAACTCA
TCAAGAGTCTAGGACTTGATACCTATACGAAACTTTTAAAAGAAGCAGACACTGAGAATCAAGATGTCGCTAAGCGTTAT
GAAAAATACGCTGAAGCTCAAGCTTGGATGATTGATAGTTCTCTGATCATGTCTACGATGTCAAATGGTGGTACAGCCTC
TGTAACCAAAGTAACTCCCTTTACACGTGCTTATTCTCTAGTGGGAATCAAAGGTGATGGAAATAACTACAAGTACATGA
GACTGCAAAAAGATCCTGTTACCAAGAAACAATTTGATGAAGCTAAGGCTAAGTGGGAAGAAGAAAGTAAAAAGGCTATC
GAAAAGAGTCAAAAAGAATTTTCTAACCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

51.142

100

0.515
  amiA3 Streptococcus thermophilus LMG 18311

50.989

100

0.514
  amiA Streptococcus salivarius strain HSISS4

50.61

100

0.509

Multiple sequence alignment