Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SNAG_RS08195 Genome accession   NZ_AP017652
Coordinates   1595838..1597805 (-) Length   655 a.a.
NCBI ID   WP_096408326.1    Uniprot ID   A0A1E1GCG9
Organism   Streptococcus sp. NPS 308     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590838..1602805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS08180 (SNAG_1603) cps4B 1591352..1592083 (-) 732 WP_096408319.1 capsular polysaccharide biosynthesis protein Cps4B -
  SNAG_RS08185 (SNAG_1604) - 1592085..1593530 (-) 1446 WP_096408321.1 LCP family protein -
  SNAG_RS08190 (SNAG_1605) amiA3 1593724..1595682 (-) 1959 WP_096408324.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS08195 (SNAG_1606) amiA 1595838..1597805 (-) 1968 WP_096408326.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS08200 (SNAG_1607) - 1597974..1599584 (-) 1611 WP_096408329.1 alpha-glucosidase -
  SNAG_RS08205 (SNAG_1608) - 1599737..1601221 (+) 1485 WP_096408331.1 DUF1846 domain-containing protein -
  SNAG_RS08210 (SNAG_1609) - 1601316..1601798 (+) 483 WP_000032557.1 S-ribosylhomocysteine lyase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72456.11 Da        Isoelectric Point: 5.1434

>NTDB_id=68367 SNAG_RS08195 WP_096408326.1 1595838..1597805(-) (amiA) [Streptococcus sp. NPS 308]
MRSKKWLLGAGAVLSAALLLTACGQSEKKADAPKTFSYVYAMDPSSLDYSVTSKSSTSDVIANVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAKDFVTGLKHAADGKSDGLSLLQDSIKGLAEYISGESNDFSTVG
VKAVDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLNSKGSDYGAPTPSGILYNGPYFLKSLTSKSVIEYEKNPNYWDK
DNVKIDNIKLTFYDGSDQESLIRSFTQGAYTTARLFPTSSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DEAQKTSTKEALLNKNFRQALNFALDRHSYTAQLNGEEGADKIIRNSLVPHDYVQVGEKTFGELAQAELVSYGDQWKDVA
LTDGKDTLYSPEKAKAAFAKAKAELQAKGVTFPIRLDVPVEQTDVIAVQQTNSLKQSIESTLGTENVIVDVLQMTDNEKM
SITSQAKVPAQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITRGKDPEVMAQVGLDEYKKLLDDAAAETSDLN
KRYEKYAKAQAWVSDSSLLIPVASSGGSPTVSRTVPFTKAYSQVGIKGDPFVFKGLELQNDVVTTKEYEEALKKWQKEKI
ETNAKYQKELEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=68367 SNAG_RS08195 WP_096408326.1 1595838..1597805(-) (amiA) [Streptococcus sp. NPS 308]
ATGAGATCGAAAAAGTGGCTCTTAGGAGCAGGTGCTGTTTTGAGTGCAGCCCTTCTGTTAACAGCTTGTGGGCAAAGTGA
AAAAAAGGCTGATGCTCCCAAGACATTTTCATATGTCTACGCTATGGATCCATCATCTTTGGACTACAGCGTGACGAGCA
AGAGCTCAACTTCTGACGTTATAGCCAACGTTGTCGATGGCCTTTTGGAAAATGATAAGTATGGAAACTTAATTCCATCA
CTTGCAGAAGACTGGTCCGTTTCTAAAGATGGTTTGACTTATACCTACAAACTCCGTAAAGGTGTAAAATGGTATACTTC
TGAAGGAGAAGAGTATGCTGAAGTCAAGGCCAAGGACTTTGTTACTGGTCTGAAACACGCAGCTGATGGCAAATCAGACG
GCCTCTCTCTCCTTCAAGATTCTATCAAAGGGTTGGCAGAGTATATCAGTGGAGAAAGCAATGATTTCTCTACTGTAGGA
GTTAAGGCTGTCGATGATTACACGGTAGAATACACGCTCAACAAACCAGAAAGTTTCTGGAACTCTAAGGTCACAACTGC
GACCATGCTCCCAGTTAATGAAGAATTTTTGAATTCTAAAGGGAGCGACTACGGTGCACCAACCCCATCAGGTATCCTAT
ATAATGGTCCTTATTTCTTGAAATCATTGACTTCAAAATCAGTCATTGAATATGAAAAGAATCCAAACTATTGGGACAAG
GACAATGTTAAGATTGACAACATCAAACTAACCTTCTATGATGGTTCCGACCAAGAATCCTTGATTCGAAGTTTTACGCA
GGGTGCTTATACAACAGCTCGTCTCTTCCCAACAAGCTCAAACTTTGAGTCAACTAAGAAAGAGTACGGAGATAAGATTG
TCTACAGTCCACAAGAAGCGACAAGCTACTACCTCACTGTTAACGTAAACCGCCAGTCTTACAATAAAACAGCCAAAACA
GACGAGGCTCAAAAAACATCAACAAAAGAAGCTCTTCTCAACAAGAATTTCCGTCAGGCCTTGAACTTTGCCCTTGATCG
TCATTCTTACACGGCTCAGTTGAATGGTGAAGAAGGTGCGGATAAAATTATCCGTAACAGTCTAGTACCTCATGACTACG
TTCAAGTAGGTGAAAAGACATTTGGAGAGTTGGCACAGGCAGAGTTGGTTTCTTATGGAGACCAATGGAAAGATGTAGCC
CTTACTGATGGTAAGGATACGCTTTACAGTCCTGAAAAAGCCAAGGCAGCCTTTGCAAAGGCTAAGGCAGAATTGCAGGC
TAAGGGTGTGACCTTCCCAATCCGTTTGGATGTTCCAGTTGAGCAGACCGATGTCATTGCCGTTCAACAGACGAACTCAC
TCAAGCAGTCTATCGAATCAACACTGGGTACCGAGAATGTCATTGTCGATGTCCTTCAAATGACCGATAATGAGAAAATG
AGCATTACTTCTCAAGCTAAGGTTCCAGCACAAAAAGACTACGACTTGAATGGAACTGGTTGGGGACCAGACTATCAAGA
CCCAGCTACCTACCTAAACATTCTTGATGCTAAGAAGGGTTCTGCCCTTAAACACTTGGGTATCACTCGTGGAAAAGATC
CAGAAGTAATGGCTCAAGTCGGTCTAGACGAATACAAGAAACTCTTGGATGATGCCGCAGCTGAAACAAGCGACCTCAAT
AAGCGTTACGAAAAATACGCTAAAGCGCAAGCCTGGGTATCGGATAGCTCGCTCTTGATCCCAGTTGCTTCTTCAGGTGG
TTCTCCAACTGTTAGCCGTACTGTGCCATTCACAAAAGCATATTCTCAAGTCGGAATCAAGGGAGATCCATTTGTGTTCA
AAGGTTTGGAATTGCAAAATGATGTCGTGACTACAAAAGAATACGAAGAAGCTCTCAAGAAATGGCAGAAAGAAAAGATT
GAAACAAATGCCAAATACCAAAAAGAGCTAGAAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E1GCG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.319

100

0.556
  amiA3 Streptococcus thermophilus LMD-9

54.476

100

0.548
  amiA3 Streptococcus thermophilus LMG 18311

54.021

100

0.544

Multiple sequence alignment