Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   SNAG_RS05970 Genome accession   NZ_AP017652
Coordinates   1149809..1150765 (-) Length   318 a.a.
NCBI ID   WP_096407503.1    Uniprot ID   A0A1E1GBB0
Organism   Streptococcus sp. NPS 308     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1144809..1155765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS05950 (SNAG_1166) - 1144852..1146075 (-) 1224 WP_096407492.1 FtsW/RodA/SpoVE family cell cycle protein -
  SNAG_RS05955 (SNAG_1167) prsA 1146264..1147205 (-) 942 WP_096407495.1 peptidylprolyl isomerase PrsA -
  SNAG_RS05960 (SNAG_1168) - 1147273..1147986 (-) 714 WP_096407497.1 O-methyltransferase -
  SNAG_RS05965 (SNAG_1169) pepF 1147988..1149790 (-) 1803 WP_096407500.1 oligoendopeptidase F Regulator
  SNAG_RS05970 (SNAG_1170) coiA 1149809..1150765 (-) 957 WP_096407503.1 competence protein CoiA family protein Machinery gene
  SNAG_RS05975 (SNAG_1171) - 1150831..1151208 (-) 378 WP_096407505.1 type II toxin-antitoxin system HicB family antitoxin -
  SNAG_RS05980 (SNAG_1172) - 1151235..1151423 (-) 189 WP_096407508.1 type II toxin-antitoxin system HicA family toxin -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 38084.63 Da        Isoelectric Point: 9.5345

>NTDB_id=68352 SNAG_RS05970 WP_096407503.1 1149809..1150765(-) (coiA) [Streptococcus sp. NPS 308]
MFVARDAKGNLVNALEKDVTKQAYTCPACGGRLRLRQGQSIRTHFAHERLRDCMAIFENESPEHMGNKEALYHWAKKDNQ
VALEYSLPEIQQIADVLVNEKLALEVQCSPLSQKLLGDRSQGYRSQGYKVIWLLGEKLWLKERLTQLQRGFLYFSQNMGF
YVWELDFKKQVLRLKYLLHQDLRGKLHFQVKEFPYGQGNLLEILRFPYQKQKLPRFAVVQDSTICHYIRQQLYYQTSYWM
KKQEEAYYQRDNLLNHQLDDWYPQVRPIESGDFLQIETDLTSYYRNFQAYYQKNPKNNRQKLYPPAFYHLYFSKNVVK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=68352 SNAG_RS05970 WP_096407503.1 1149809..1150765(-) (coiA) [Streptococcus sp. NPS 308]
ATGTTTGTAGCCAGAGATGCCAAGGGAAATTTGGTGAATGCTCTCGAAAAAGATGTTACCAAGCAAGCTTATACTTGTCC
AGCCTGTGGGGGCAGACTACGATTACGCCAAGGACAGAGTATTCGGACGCATTTTGCCCATGAAAGGTTAAGGGATTGCA
TGGCTATTTTCGAGAATGAAAGTCCAGAACACATGGGCAACAAAGAGGCCCTTTATCACTGGGCCAAGAAGGACAATCAG
GTCGCCTTAGAATATAGTCTGCCCGAGATTCAGCAGATAGCAGATGTTCTCGTCAATGAGAAACTAGCTCTGGAGGTTCA
GTGCAGTCCCTTGTCTCAAAAGCTTTTAGGCGACAGAAGTCAAGGCTACCGTAGTCAGGGCTACAAAGTTATTTGGCTAC
TGGGAGAAAAACTCTGGTTAAAGGAGCGATTAACACAACTGCAAAGGGGATTTCTCTATTTTAGTCAAAATATGGGTTTC
TATGTTTGGGAACTAGATTTCAAAAAACAAGTTTTGAGACTCAAATATCTTTTGCATCAGGACCTACGTGGCAAGCTTCA
TTTTCAGGTCAAAGAATTTCCCTATGGTCAAGGAAATCTCTTGGAAATCCTACGATTTCCTTATCAAAAACAAAAACTAC
CTCGTTTTGCAGTTGTGCAAGATTCCACTATCTGTCACTACATTCGCCAGCAGTTGTACTACCAAACGTCCTACTGGATG
AAGAAGCAGGAGGAAGCTTATTATCAAAGAGACAATCTATTAAACCATCAACTGGACGACTGGTATCCCCAGGTCAGACC
GATAGAGTCAGGTGATTTTTTGCAGATTGAAACGGATTTGACTAGCTATTATAGAAATTTTCAGGCTTACTATCAAAAAA
ATCCGAAAAATAATCGCCAAAAGCTCTATCCACCAGCCTTTTATCACTTATATTTCTCAAAAAATGTGGTAAAATAG

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(12-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E1GBB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus pneumoniae Rx1

70.44

100

0.704
  coiA Streptococcus pneumoniae D39

70.44

100

0.704
  coiA Streptococcus pneumoniae R6

70.44

100

0.704
  coiA Streptococcus pneumoniae TIGR4

70.126

100

0.701
  coiA Streptococcus mitis NCTC 12261

70.126

100

0.701
  coiA Lactococcus lactis subsp. cremoris KW2

41.538

100

0.425

Multiple sequence alignment