Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   SNAG_RS05965 Genome accession   NZ_AP017652
Coordinates   1147988..1149790 (-) Length   600 a.a.
NCBI ID   WP_096407500.1    Uniprot ID   A0A1E1GB86
Organism   Streptococcus sp. NPS 308     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1142988..1154790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS05950 (SNAG_1166) - 1144852..1146075 (-) 1224 WP_096407492.1 FtsW/RodA/SpoVE family cell cycle protein -
  SNAG_RS05955 (SNAG_1167) prsA 1146264..1147205 (-) 942 WP_096407495.1 peptidylprolyl isomerase PrsA -
  SNAG_RS05960 (SNAG_1168) - 1147273..1147986 (-) 714 WP_096407497.1 O-methyltransferase -
  SNAG_RS05965 (SNAG_1169) pepF 1147988..1149790 (-) 1803 WP_096407500.1 oligoendopeptidase F Regulator
  SNAG_RS05970 (SNAG_1170) coiA 1149809..1150765 (-) 957 WP_096407503.1 competence protein CoiA family protein Machinery gene
  SNAG_RS05975 (SNAG_1171) - 1150831..1151208 (-) 378 WP_096407505.1 type II toxin-antitoxin system HicB family antitoxin -
  SNAG_RS05980 (SNAG_1172) - 1151235..1151423 (-) 189 WP_096407508.1 type II toxin-antitoxin system HicA family toxin -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69836.78 Da        Isoelectric Point: 4.6005

>NTDB_id=68351 SNAG_RS05965 WP_096407500.1 1147988..1149790(-) (pepF) [Streptococcus sp. NPS 308]
MVLQRHEINEKDTWDLSTIYPTDQAWEEALKDLTEKVQTAAQYEGHLLDRADSLLEITEFSLDLERQVEKLYVYAHMKND
QDTREAKYQEYYAKAMTLYSQLEQAFSFYEPEFMEISEEQYAAFLEAQPKLQVYKHFFDKLLQKKDHVLSQREEELLAGA
GEIFGAASETFAILDNADISFPYVLDDEGNEVQLSHGTYIRLMESKNREVRRGAYEALYATYEQFQHTYAKTLQTNVKVQ
NYRAKVRNYKSARHAALAANFVPESVYDNLVAAVRKHLPLLHRYLELRSKILGISDLKMYDVYTPLSSVEYSFTYEEALK
KAEEALAVLGDDYLSRVKRAFSERWIDVYENQGKRSGAYSGGSYDTNAFMLLNWQDNLDNLFTLVHETGHSMHSSYTRET
QPYVYGDYSIFLAEIASTTNENILTEKLLEEVEDDATRFAILNNFLDGFRGTVFRQTQFAEFEHAIHQADQNGEVLTSDF
LNKLYADLNQEYYGLSKEDNPQIQYEWARIPHFYYNYYVYQYSTGFAAASALAEKIVHGSQEDRDRYIDYLKAGKSDYPL
NVMRKAGVDMEKEDYLNDAFAVFERRLNEFEALVEKLGLA

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=68351 SNAG_RS05965 WP_096407500.1 1147988..1149790(-) (pepF) [Streptococcus sp. NPS 308]
ATGGTATTACAACGACATGAAATAAATGAAAAAGATACATGGGATCTTTCAACAATCTACCCAACAGATCAAGCTTGGGA
AGAAGCCTTGAAAGACTTAACTGAAAAAGTACAAACAGCAGCCCAGTATGAGGGGCATCTCTTGGACAGAGCAGACAGTT
TGCTTGAGATTACAGAATTCTCACTTGACTTGGAACGCCAAGTTGAAAAACTTTATGTCTATGCACATATGAAAAATGAC
CAAGACACGCGTGAAGCCAAGTATCAGGAGTACTATGCTAAGGCTATGACCTTATACAGTCAGTTAGAACAAGCCTTTTC
ATTCTATGAACCTGAGTTTATGGAGATTAGTGAGGAGCAGTATGCGGCCTTCCTAGAAGCTCAACCAAAACTCCAAGTTT
ATAAGCACTTTTTTGACAAGCTCTTGCAAAAGAAAGACCATGTTCTTTCGCAACGTGAAGAAGAATTGCTTGCTGGAGCA
GGAGAAATCTTTGGCGCTGCTAGTGAAACCTTTGCTATTTTGGATAATGCGGATATTAGCTTCCCATACGTTCTTGATGA
CGAAGGCAATGAAGTACAACTCTCACACGGTACTTACATCCGTTTGATGGAGTCTAAAAACCGTGAAGTGCGTCGTGGTG
CCTATGAAGCCCTTTATGCGACATACGAGCAATTCCAACACACTTATGCTAAGACTTTGCAGACAAATGTTAAAGTGCAA
AACTACCGCGCAAAAGTTCGCAACTATAAGAGTGCTCGCCATGCAGCCCTCGCAGCAAACTTTGTTCCAGAAAGTGTCTA
TGACAATCTAGTAGCAGCAGTTCGCAAGCATTTGCCACTCTTGCATCGTTACCTTGAACTTCGTTCTAAAATCTTGGGGA
TTTCTGATCTCAAGATGTACGATGTCTACACACCGCTATCTTCAGTAGAATACAGCTTTACTTATGAGGAAGCCTTGAAA
AAGGCAGAAGAAGCCTTGGCGGTCTTGGGTGACGATTACTTGAGTCGAGTCAAACGTGCCTTTAGCGAGCGTTGGATTGA
TGTCTATGAAAACCAAGGCAAGCGTTCTGGTGCCTACTCTGGTGGTTCTTATGATACCAATGCCTTCATGCTCCTCAACT
GGCAGGACAATCTAGACAATCTCTTTACCCTTGTACACGAAACAGGTCACAGTATGCACTCTAGCTATACTCGTGAAACT
CAGCCTTACGTTTACGGAGATTATTCTATCTTCTTGGCTGAGATTGCCTCAACGACCAACGAAAACATCTTGACGGAGAA
ATTGTTAGAAGAAGTAGAAGACGATGCGACACGCTTTGCAATCCTCAATAACTTCTTGGACGGTTTCCGTGGAACAGTCT
TCCGTCAAACTCAATTCGCTGAGTTTGAACATGCTATCCATCAAGCAGATCAAAATGGAGAAGTCTTGACAAGTGATTTC
CTTAATAAACTCTACGCTGACTTGAATCAAGAGTACTATGGACTCAGCAAGGAAGATAATCCTCAGATCCAATACGAGTG
GGCGCGCATTCCACACTTCTACTATAACTACTATGTTTATCAGTATTCAACAGGTTTTGCAGCCGCTTCAGCCTTAGCTG
AGAAGATTGTCCATGGTAGTCAAGAAGATCGTGACCGCTATATCGACTACCTCAAGGCAGGTAAATCAGACTATCCACTC
AATGTCATGAGAAAAGCGGGTGTTGATATGGAGAAAGAAGACTACCTCAACGATGCCTTTGCAGTCTTTGAACGTCGCTT
GAACGAGTTTGAAGCCCTTGTTGAAAAATTGGGACTAGCTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E1GB86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

67.282

99.333

0.668

Multiple sequence alignment