Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   OIS45_RS06240 Genome accession   NZ_CP110126
Coordinates   1320651..1321673 (-) Length   340 a.a.
NCBI ID   WP_014937509.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain S63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1315651..1326673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIS45_RS06220 (OIS45_06220) uvrC 1316328..1318118 (-) 1791 WP_267274452.1 excinuclease ABC subunit UvrC Machinery gene
  OIS45_RS06225 (OIS45_06225) - 1318138..1319127 (-) 990 WP_014937512.1 cation diffusion facilitator family transporter -
  OIS45_RS06230 (OIS45_06230) coaE 1319141..1319731 (-) 591 WP_161398601.1 dephospho-CoA kinase -
  OIS45_RS06235 (OIS45_06235) - 1319747..1320613 (-) 867 WP_161398600.1 MBL fold metallo-hydrolase -
  OIS45_RS06240 (OIS45_06240) ruvB 1320651..1321673 (-) 1023 WP_014937509.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OIS45_RS06245 (OIS45_06245) - 1321835..1322341 (-) 507 WP_013447088.1 ferritin -
  OIS45_RS06250 (OIS45_06250) - 1322420..1322932 (-) 513 WP_004916529.1 NUDIX hydrolase -
  OIS45_RS06255 (OIS45_06255) xerD 1322937..1323848 (-) 912 WP_013447089.1 site-specific tyrosine recombinase XerD -
  OIS45_RS06260 (OIS45_06260) - 1323849..1324280 (-) 432 WP_013447090.1 deoxycytidylate deaminase -
  OIS45_RS06265 (OIS45_06265) - 1324306..1325070 (-) 765 WP_161398599.1 enoyl-CoA hydratase/isomerase family protein -
  OIS45_RS06270 (OIS45_06270) - 1325082..1326233 (-) 1152 WP_161398598.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 38059.70 Da        Isoelectric Point: 5.0754

>NTDB_id=683272 OIS45_RS06240 WP_014937509.1 1320651..1321673(-) (ruvB) [Riemerella anatipestifer strain S63]
MPDFLHPDKENYSAEELLLEEQIRPQSFKDFAGQRRTLDNLEVFVAAAKKRGSALDHTLLHGPPGLGKTTLAHIIANELG
VGFKVTSGPVLDKPGSLAGLLTNLEENDVLFIDEIHRLSPVVEEYLYSAMEDYKIDIMLETGPNARSVQINLNPFTLVGA
TTRSGMLTKPMLARFGIQSRLEYYTVELLGMIIERSARVLGVPIYEDAALEIARRSRGTPRIANALLRRVRDFAEIKGNG
EIEIKITKFALDSLNVDEFGLDDMDNKIMRVMIENFKGKPVGISALATSIGENPETLEEVYEPFLIQEGFIIRTPRGREV
TDKAYQHLNINRTKNMGELF

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=683272 OIS45_RS06240 WP_014937509.1 1320651..1321673(-) (ruvB) [Riemerella anatipestifer strain S63]
ATGCCAGACTTCTTACATCCAGATAAAGAGAATTATTCAGCCGAAGAGCTTTTATTAGAAGAGCAAATACGCCCTCAATC
ATTCAAAGATTTTGCGGGACAAAGGCGTACTTTAGATAATTTAGAAGTCTTTGTAGCGGCTGCCAAAAAACGAGGTTCTG
CACTAGACCACACACTTCTGCACGGTCCTCCAGGGTTAGGAAAAACCACTCTAGCCCACATTATTGCTAATGAACTTGGT
GTAGGTTTTAAAGTAACCTCTGGTCCTGTCTTAGACAAACCTGGAAGTTTGGCTGGACTCCTTACCAATTTAGAAGAAAA
CGATGTTCTTTTCATAGACGAAATACACCGTTTATCTCCCGTAGTAGAAGAGTACCTCTATTCCGCTATGGAAGATTACA
AGATAGATATTATGCTGGAAACAGGACCTAATGCCCGTTCAGTGCAAATCAATCTTAATCCATTTACTTTAGTTGGAGCT
ACTACAAGAAGCGGTATGCTTACCAAACCAATGCTAGCAAGGTTTGGGATACAATCTAGGTTAGAGTACTACACAGTAGA
ACTTTTAGGTATGATTATCGAAAGAAGTGCTAGAGTGCTTGGCGTTCCTATTTATGAAGATGCTGCACTAGAGATAGCTA
GAAGAAGCCGAGGCACTCCTAGAATTGCGAATGCTCTACTTCGCCGTGTGCGAGATTTTGCAGAAATAAAAGGCAATGGT
GAGATAGAAATAAAGATAACCAAATTCGCACTAGATTCTCTCAATGTAGATGAGTTTGGGCTTGATGATATGGACAACAA
AATTATGAGAGTAATGATAGAGAACTTCAAAGGTAAACCTGTGGGAATTTCTGCATTAGCCACTTCCATCGGAGAAAATC
CAGAGACTTTGGAAGAAGTTTATGAGCCTTTTTTAATTCAAGAAGGATTCATCATCAGAACACCAAGAGGTCGAGAAGTT
ACCGATAAGGCTTACCAACACCTTAACATCAATAGAACTAAAAATATGGGAGAGCTTTTCTAA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(258-329)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Streptococcus pneumoniae TIGR4

57.143

92.647

0.529
  ruvB Streptococcus pneumoniae R6

57.143

92.647

0.529
  ruvB Streptococcus pneumoniae D39

57.143

92.647

0.529
  ruvB Bacillus subtilis subsp. subtilis str. 168

56.508

92.647

0.524
  ruvB Synechocystis sp. PCC 6803

47.447

97.941

0.465
  ruvB Helicobacter pylori 26695

47.937

92.647

0.444