Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   OIS45_RS06220 Genome accession   NZ_CP110126
Coordinates   1316328..1318118 (-) Length   596 a.a.
NCBI ID   WP_267274452.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain S63     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1311328..1323118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIS45_RS06200 (OIS45_06200) - 1311526..1312524 (-) 999 WP_154469132.1 aminoglycoside phosphotransferase family protein -
  OIS45_RS06205 (OIS45_06205) lnt 1312558..1314201 (-) 1644 WP_154469133.1 apolipoprotein N-acyltransferase -
  OIS45_RS06210 (OIS45_06210) - 1314259..1314672 (+) 414 WP_161398604.1 VanZ family protein -
  OIS45_RS06215 (OIS45_06215) - 1314662..1316287 (-) 1626 WP_161398603.1 T9SS type A sorting domain-containing protein -
  OIS45_RS06220 (OIS45_06220) uvrC 1316328..1318118 (-) 1791 WP_267274452.1 excinuclease ABC subunit UvrC Machinery gene
  OIS45_RS06225 (OIS45_06225) - 1318138..1319127 (-) 990 WP_014937512.1 cation diffusion facilitator family transporter -
  OIS45_RS06230 (OIS45_06230) coaE 1319141..1319731 (-) 591 WP_161398601.1 dephospho-CoA kinase -
  OIS45_RS06235 (OIS45_06235) - 1319747..1320613 (-) 867 WP_161398600.1 MBL fold metallo-hydrolase -
  OIS45_RS06240 (OIS45_06240) ruvB 1320651..1321673 (-) 1023 WP_014937509.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OIS45_RS06245 (OIS45_06245) - 1321835..1322341 (-) 507 WP_013447088.1 ferritin -
  OIS45_RS06250 (OIS45_06250) - 1322420..1322932 (-) 513 WP_004916529.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 69144.92 Da        Isoelectric Point: 9.0474

>NTDB_id=683271 OIS45_RS06220 WP_267274452.1 1316328..1318118(-) (uvrC) [Riemerella anatipestifer strain S63]
MNETLELQLKTLPKEPGVYRYYDEAGQLLYVGKAKNLKNRVLTYFNKSQVGYKTRIMVKKIHRLEITIVPSEYDALLLEN
NLIKEHQPFYNIMMKDDKSFPWLCIKNEPFPRLFLTRKRIKDGSEYYGPYAKAKPAKVLLETIKNLYKIRTCTLNLSEDR
IEKANYKVCLEYHIKNCEGPCEGLESEEDYEKKINAVRGIIKGDFRLAKAHLEEEMLKHASNLEFEKAQMVKEKLEFLED
YQVKHTVVNPSIDEVDVFGMVSDETAAYINYFKIRNGNIVQSYTSEFRKKLEESDEEILEEAVVAIRDKFQSESKEILLP
FHLGTEIPQVKLIVPKVGDKKRIVELSEKNAREYRLEKLKQIQIVDPDRHTNRIMAEMKTLLRLPEEPRHIEGFDNSNIQ
GTNPVSACVVFKDGKPSKKDYRIFHIKTVEGPNDFASMEEVIYRRYKRYLDEGEPLPQLILIDGGKGQLSSAVKSLKKLD
LYGKISIIGIAKRLEELFFPNDPIPLYLDKTSETLKVLQRVRDEAHRFGVKHHRTRRTNSTIKSELEEIPGVGAKSIELL
LSKLKSVKRIKEASQETLEEILGKSKGSIVWQYFNG

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=683271 OIS45_RS06220 WP_267274452.1 1316328..1318118(-) (uvrC) [Riemerella anatipestifer strain S63]
GTGAATGAGACTTTAGAACTTCAGCTAAAAACTTTACCAAAAGAACCTGGCGTTTACCGCTACTATGACGAAGCGGGGCA
ACTGCTCTATGTAGGGAAAGCCAAAAACCTTAAAAACAGGGTACTAACTTACTTCAATAAAAGTCAAGTGGGTTACAAGA
CCAGAATTATGGTTAAAAAAATCCACCGCTTAGAGATTACTATAGTTCCCAGCGAATACGACGCCCTCCTTTTAGAAAAC
AACCTCATCAAGGAACATCAGCCTTTCTACAATATTATGATGAAAGACGACAAAAGTTTCCCTTGGTTGTGTATCAAAAA
TGAACCTTTCCCTAGACTATTTCTTACCAGAAAACGCATTAAAGATGGCTCCGAATATTATGGTCCTTACGCTAAAGCAA
AACCTGCCAAGGTACTTTTAGAAACCATTAAAAACCTCTATAAAATCAGGACTTGCACGCTTAACCTTTCCGAAGATAGG
ATAGAGAAAGCCAATTATAAAGTCTGTTTAGAATACCACATTAAAAACTGCGAAGGTCCTTGCGAAGGTCTAGAAAGCGA
GGAAGATTACGAAAAGAAAATCAATGCTGTAAGAGGAATTATAAAAGGGGATTTCCGTTTGGCAAAAGCACACTTGGAAG
AGGAGATGCTAAAACACGCCTCCAACCTAGAGTTTGAAAAAGCTCAAATGGTAAAGGAAAAGTTGGAGTTTTTGGAAGAT
TATCAGGTTAAACATACTGTGGTTAATCCTAGTATAGATGAGGTAGATGTCTTTGGTATGGTAAGCGATGAAACGGCAGC
TTACATCAATTATTTTAAAATCAGAAATGGAAATATCGTTCAAAGTTATACTTCCGAATTCAGAAAAAAACTAGAAGAAA
GTGACGAGGAAATACTAGAAGAAGCCGTAGTTGCAATTAGAGATAAGTTTCAATCCGAATCTAAGGAAATATTACTACCG
TTCCATTTAGGCACCGAAATTCCTCAAGTGAAACTCATCGTTCCTAAAGTGGGAGACAAAAAGAGAATTGTAGAACTCTC
CGAAAAAAATGCGAGAGAATATCGTCTAGAAAAATTAAAACAAATCCAAATTGTAGACCCCGACCGCCATACCAACCGCA
TTATGGCAGAAATGAAAACACTCCTTAGACTTCCTGAAGAGCCAAGACACATTGAGGGGTTTGACAATTCTAATATCCAA
GGGACTAATCCCGTGTCTGCCTGTGTCGTCTTTAAAGATGGTAAACCAAGCAAGAAGGATTATCGTATTTTTCACATCAA
AACCGTAGAAGGTCCTAACGATTTCGCTTCTATGGAAGAAGTAATTTACCGAAGGTACAAAAGATATTTAGATGAAGGCG
AACCTCTACCCCAACTGATATTGATAGACGGCGGTAAGGGGCAACTGAGTTCTGCCGTTAAAAGTTTGAAAAAGTTAGAT
TTATATGGTAAAATCTCCATCATAGGTATTGCTAAAAGGTTAGAAGAGCTATTTTTCCCTAACGACCCCATTCCTTTATA
TTTAGACAAAACTTCGGAAACACTTAAAGTCTTACAAAGAGTGAGAGACGAAGCCCACCGTTTTGGAGTGAAGCACCACC
GCACCAGAAGAACCAACAGCACCATAAAATCAGAATTGGAAGAAATCCCAGGCGTTGGAGCTAAATCCATAGAGCTATTG
CTAAGTAAACTAAAATCAGTAAAGCGTATTAAAGAAGCCTCACAGGAAACCTTAGAGGAAATTTTAGGTAAGTCTAAAGG
CAGTATAGTATGGCAGTATTTTAATGGATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(380-530)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae R6

37.119

98.993

0.367
  uvrC Streptococcus pneumoniae D39

37.119

98.993

0.367
  uvrC Streptococcus pneumoniae TIGR4

36.949

98.993

0.366