Detailed information NTG0068298

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPPMSS1_RS07005
• Genome accession: NZ_AP017633
• Coordinates: 1482218..1483198 (-)
• Length: 326 a.a.
• NCBI ID: WP_077231619.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PMSS1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1477218..1488198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPMSS1_RS07835	-	1477263..1477474 (+)	212	Protein_1375	anthranilate synthase component I	-
HPPMSS1_RS06985 (HPATCC43504_RS07275)	-	1477501..1478433 (-)	933	WP_077231623.1	GDP-L-fucose synthase	-
HPPMSS1_RS06990 (HPATCC43504_RS07280)	gmd	1478426..1479571 (-)	1146	WP_077231622.1	GDP-mannose 4,6-dehydratase	-
HPPMSS1_RS06995 (HPATCC43504_RS07285)	-	1479612..1481024 (-)	1413	WP_077231621.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPPMSS1_RS07000 (HPATCC43504_RS07290)	comB10	1481095..1482225 (-)	1131	WP_077231620.1	DNA type IV secretion system protein ComB10	Machinery gene
HPPMSS1_RS07005 (HPATCC43504_RS07295)	comB9	1482218..1483198 (-)	981	WP_077231619.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPPMSS1_RS07010 (HPATCC43504_RS07300)	comB8	1483198..1483941 (-)	744	WP_001208396.1	virB8 family protein	Machinery gene
HPPMSS1_RS07015 (HPATCC43504_RS07305)	comB7	1483938..1484051 (-)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPPMSS1_RS07020 (HPATCC43504_RS07310)	comB6	1484067..1485122 (-)	1056	WP_077231618.1	P-type conjugative transfer protein TrbL	Machinery gene
HPPMSS1_RS07025 (HPATCC43504_RS07315)	-	1485130..1486125 (-)	996	WP_077231617.1	PDZ domain-containing protein	-
HPPMSS1_RS07030 (HPATCC43504_RS07320)	-	1486125..1486427 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
HPPMSS1_RS07035 (HPATCC43504_RS07325)	panD	1486430..1486783 (-)	354	WP_000142235.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37556.23 Da
• Isoelectric Point: 9.3371

>NTDB_id=68298 HPPMSS1_RS07005 WP_077231619.1 1482218..1483198(-) (comB9) [Helicobacter pylori strain PMSS1]
MRKFLYALMGFLLTFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFLKPQNKENMAENAPKDAPINNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGI
CSKKSKPSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFV
KKAKDE

Nucleotide

• Length: 981 bp

>NTDB_id=68298 HPPMSS1_RS07005 WP_077231619.1 1482218..1483198(-) (comB9) [Helicobacter pylori strain PMSS1]
ATGCGGAAATTTTTATATGCTCTCATGGGCTTTTTGTTGACTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAGGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
CAACGATCGTATTTTGCTTATCAAGCCTTTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAGTGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAAGATAAAAAT
TATTACTCTAACGCTTTTTTGAAGCCCCAAAATAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCATAAACAA
CAAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATGCGA
TGAAAATCGTTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATT
TGTTCTAAAAAATCCAAACCCTCTTTGATGCCTGAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAA
AAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGG
GCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTGGGCAAGGACTATTTGTGCATCCGTTTTGTC
AAAAAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-317)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.785	100	0.948