Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPPMSS1_RS07000 Genome accession   NZ_AP017633
Coordinates   1481095..1482225 (-) Length   376 a.a.
NCBI ID   WP_077231620.1    Uniprot ID   -
Organism   Helicobacter pylori strain PMSS1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1476095..1487225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPMSS1_RS06980 (HPATCC43504_RS07270) - 1476736..1477152 (+) 417 WP_077232616.1 hypothetical protein -
  HPPMSS1_RS07835 - 1477263..1477474 (+) 212 Protein_1375 anthranilate synthase component I -
  HPPMSS1_RS06985 (HPATCC43504_RS07275) - 1477501..1478433 (-) 933 WP_077231623.1 GDP-L-fucose synthase -
  HPPMSS1_RS06990 (HPATCC43504_RS07280) gmd 1478426..1479571 (-) 1146 WP_077231622.1 GDP-mannose 4,6-dehydratase -
  HPPMSS1_RS06995 (HPATCC43504_RS07285) - 1479612..1481024 (-) 1413 WP_077231621.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPPMSS1_RS07000 (HPATCC43504_RS07290) comB10 1481095..1482225 (-) 1131 WP_077231620.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPPMSS1_RS07005 (HPATCC43504_RS07295) comB9 1482218..1483198 (-) 981 WP_077231619.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPPMSS1_RS07010 (HPATCC43504_RS07300) comB8 1483198..1483941 (-) 744 WP_001208396.1 virB8 family protein Machinery gene
  HPPMSS1_RS07015 (HPATCC43504_RS07305) comB7 1483938..1484051 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  HPPMSS1_RS07020 (HPATCC43504_RS07310) comB6 1484067..1485122 (-) 1056 WP_077231618.1 P-type conjugative transfer protein TrbL Machinery gene
  HPPMSS1_RS07025 (HPATCC43504_RS07315) - 1485130..1486125 (-) 996 WP_077231617.1 PDZ domain-containing protein -
  HPPMSS1_RS07030 (HPATCC43504_RS07320) - 1486125..1486427 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HPPMSS1_RS07035 (HPATCC43504_RS07325) panD 1486430..1486783 (-) 354 WP_000142235.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41973.52 Da        Isoelectric Point: 9.8333

>NTDB_id=68297 HPPMSS1_RS07000 WP_077231620.1 1481095..1482225(-) (comB10) [Helicobacter pylori strain PMSS1]
MNKWLKGAIVFVGGFATIITISLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFKNPPIDPNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=68297 HPPMSS1_RS07000 WP_077231620.1 1481095..1482225(-) (comB10) [Helicobacter pylori strain PMSS1]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGTGGGGGGTTTTGCAACGATTATAACCATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTAAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACCAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTATTCCAAAGAAGAAACTTTTAAGAACCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGATTTTTCTTTAAAGCAATTAGATTTATTGGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AGAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAAAGCGATATTTTCGCTCACATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAACAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGGATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTATCTTTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(171-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

98.138

100

0.981

Multiple sequence alignment