Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | HPPMSS1_RS07020 | Genome accession | NZ_AP017633 |
| Coordinates | 1484067..1485122 (-) | Length | 351 a.a. |
| NCBI ID | WP_077231618.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain PMSS1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1479067..1490122
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPPMSS1_RS06995 (HPATCC43504_RS07285) | - | 1479612..1481024 (-) | 1413 | WP_077231621.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| HPPMSS1_RS07000 (HPATCC43504_RS07290) | comB10 | 1481095..1482225 (-) | 1131 | WP_077231620.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPPMSS1_RS07005 (HPATCC43504_RS07295) | comB9 | 1482218..1483198 (-) | 981 | WP_077231619.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPPMSS1_RS07010 (HPATCC43504_RS07300) | comB8 | 1483198..1483941 (-) | 744 | WP_001208396.1 | virB8 family protein | Machinery gene |
| HPPMSS1_RS07015 (HPATCC43504_RS07305) | comB7 | 1483938..1484051 (-) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPPMSS1_RS07020 (HPATCC43504_RS07310) | comB6 | 1484067..1485122 (-) | 1056 | WP_077231618.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPPMSS1_RS07025 (HPATCC43504_RS07315) | - | 1485130..1486125 (-) | 996 | WP_077231617.1 | PDZ domain-containing protein | - |
| HPPMSS1_RS07030 (HPATCC43504_RS07320) | - | 1486125..1486427 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPPMSS1_RS07035 (HPATCC43504_RS07325) | panD | 1486430..1486783 (-) | 354 | WP_000142235.1 | aspartate 1-decarboxylase | - |
| HPPMSS1_RS07040 (HPATCC43504_RS07330) | - | 1486773..1488998 (-) | 2226 | WP_077231616.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| HPPMSS1_RS07045 (HPATCC43504_RS07335) | - | 1488998..1489273 (-) | 276 | WP_077231615.1 | ATP-dependent Clp protease adaptor ClpS | - |
| HPPMSS1_RS07050 (HPATCC43504_RS07340) | - | 1489288..1489701 (-) | 414 | WP_001023005.1 | universal stress protein | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39671.65 Da Isoelectric Point: 9.0419
>NTDB_id=68301 HPPMSS1_RS07020 WP_077231618.1 1484067..1485122(-) (comB6) [Helicobacter pylori strain PMSS1]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLLLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVMCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLLLSVLQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVMCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALTSLQYITTPPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=68301 HPPMSS1_RS07020 WP_077231618.1 1484067..1485122(-) (comB6) [Helicobacter pylori strain PMSS1]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGCT
TTATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTCTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTCAATCATGGTTTTTATGCCCTTAGCT
TTATTAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTCTTTTAAGCGTTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTATGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTTTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCCCACCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
96.296 |
100 |
0.963 |