Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPPMSS1_RS07010 Genome accession   NZ_AP017633
Coordinates   1483198..1483941 (-) Length   247 a.a.
NCBI ID   WP_001208396.1    Uniprot ID   -
Organism   Helicobacter pylori strain PMSS1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1478198..1488941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPMSS1_RS06990 (HPATCC43504_RS07280) gmd 1478426..1479571 (-) 1146 WP_077231622.1 GDP-mannose 4,6-dehydratase -
  HPPMSS1_RS06995 (HPATCC43504_RS07285) - 1479612..1481024 (-) 1413 WP_077231621.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPPMSS1_RS07000 (HPATCC43504_RS07290) comB10 1481095..1482225 (-) 1131 WP_077231620.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPPMSS1_RS07005 (HPATCC43504_RS07295) comB9 1482218..1483198 (-) 981 WP_077231619.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPPMSS1_RS07010 (HPATCC43504_RS07300) comB8 1483198..1483941 (-) 744 WP_001208396.1 virB8 family protein Machinery gene
  HPPMSS1_RS07015 (HPATCC43504_RS07305) comB7 1483938..1484051 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  HPPMSS1_RS07020 (HPATCC43504_RS07310) comB6 1484067..1485122 (-) 1056 WP_077231618.1 P-type conjugative transfer protein TrbL Machinery gene
  HPPMSS1_RS07025 (HPATCC43504_RS07315) - 1485130..1486125 (-) 996 WP_077231617.1 PDZ domain-containing protein -
  HPPMSS1_RS07030 (HPATCC43504_RS07320) - 1486125..1486427 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  HPPMSS1_RS07035 (HPATCC43504_RS07325) panD 1486430..1486783 (-) 354 WP_000142235.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28780.00 Da        Isoelectric Point: 8.9604

>NTDB_id=68299 HPPMSS1_RS07010 WP_001208396.1 1483198..1483941(-) (comB8) [Helicobacter pylori strain PMSS1]
MREKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISILPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLLNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRND

Nucleotide


Download         Length: 744 bp        

>NTDB_id=68299 HPPMSS1_RS07010 WP_001208396.1 1483198..1483941(-) (comB8) [Helicobacter pylori strain PMSS1]
ATGAGAGAAAAGCCTTTCAACAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAACGATTTGGACATGCAAAGCGTGTTCAGATTGGAGAGGAACCGCTTGAAAATCGCTT
ACAAGCTCTTAGGCTTGATGAGTTTTATCGCACTTGTCTTAGCGATCGTTTTAATCAGTATCCTGCCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGTATTAATCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAGGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATCTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
GTCCATTGCTGCTAAACTTTTGAATGAAAACAAGCTCGTGTATGAAAAGCGTTATAAAATCGTATTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACTCGCTACAGCATCACTGAAATC
GCGCCGACTAACAGGAATGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.976

100

0.98

Multiple sequence alignment