Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M1B72_RS00535 Genome accession   NZ_CP096574
Coordinates   134153..134599 (-) Length   148 a.a.
NCBI ID   WP_183343963.1    Uniprot ID   A0A6V8MQ31
Organism   Geomonas paludis strain RG22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 129153..139599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1B72_RS00520 (M1B72_00520) - 129382..129735 (-) 354 WP_183343969.1 hypothetical protein -
  M1B72_RS00525 (M1B72_00525) - 129979..131310 (+) 1332 WP_183343967.1 sensor histidine kinase -
  M1B72_RS00530 (M1B72_00530) - 131671..134046 (+) 2376 WP_183343965.1 PAS domain S-box protein -
  M1B72_RS00535 (M1B72_00535) ssb 134153..134599 (-) 447 WP_183343963.1 single-stranded DNA-binding protein Machinery gene
  M1B72_RS00540 (M1B72_00540) - 134717..135412 (+) 696 WP_183343961.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  M1B72_RS00545 (M1B72_00545) - 135413..135595 (+) 183 WP_183343959.1 hypothetical protein -
  M1B72_RS00550 (M1B72_00550) - 135624..136019 (+) 396 WP_183343957.1 hypothetical protein -
  M1B72_RS00555 (M1B72_00555) - 136107..137783 (+) 1677 WP_248646834.1 ribonuclease J -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16378.20 Da        Isoelectric Point: 5.3193

>NTDB_id=681824 M1B72_RS00535 WP_183343963.1 134153..134599(-) (ssb) [Geomonas paludis strain RG22]
MASLNKVMLIGNLGKDPEVRYTAGGTAVASFSLATTDRIKGKDGNWEDKTEWHNITLWARLAEIAGEYLSKGKTVYIEGR
LQTRKWTDKDGKDRYTTEIVGEKMQMLSAKGEGGQRQGGQGGGRPQQDYNQGGGYEEPTFNPDDEIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=681824 M1B72_RS00535 WP_183343963.1 134153..134599(-) (ssb) [Geomonas paludis strain RG22]
ATGGCAAGTCTCAACAAGGTGATGCTCATAGGCAACCTGGGCAAAGACCCCGAGGTGCGCTACACCGCCGGCGGTACCGC
CGTAGCTTCCTTCTCCCTGGCCACCACCGACCGCATCAAGGGCAAGGACGGCAACTGGGAAGACAAGACCGAATGGCACA
ACATCACCCTCTGGGCGCGTCTGGCCGAGATCGCCGGCGAGTACCTTTCCAAGGGGAAGACCGTATATATCGAAGGACGT
CTGCAGACCCGCAAGTGGACCGACAAGGACGGCAAAGACCGCTACACCACCGAGATCGTGGGCGAGAAGATGCAGATGCT
CTCCGCCAAGGGTGAAGGCGGCCAGCGCCAGGGCGGCCAGGGCGGCGGCAGGCCCCAGCAGGATTACAACCAGGGCGGCG
GTTACGAGGAGCCGACATTCAACCCGGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6V8MQ31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

48.023

100

0.574
  ssb Glaesserella parasuis strain SC1401

42.778

100

0.52
  ssb Neisseria meningitidis MC58

53.636

74.324

0.399
  ssb Neisseria gonorrhoeae MS11

53.636

74.324

0.399
  ssbA Bacillus subtilis subsp. subtilis str. 168

32.948

100

0.385