Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M1F24_RS02460 Genome accession   NZ_CP096335
Coordinates   588015..588536 (+) Length   173 a.a.
NCBI ID   WP_140172640.1    Uniprot ID   -
Organism   Providencia sp. PROV083     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 588692..589639 588015..588536 flank 156


Gene organization within MGE regions


Location: 588015..589639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1F24_RS02460 ssb 588015..588536 (+) 522 WP_140172640.1 single-stranded DNA-binding protein Machinery gene
  M1F24_RS02465 - 588692..589639 (-) 948 WP_140035165.1 IS30 family transposase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18555.55 Da        Isoelectric Point: 4.9468

>NTDB_id=681191 M1F24_RS02460 WP_140172640.1 588015..588536(+) (ssb) [Providencia sp. PROV083]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDAASQGQGSQGGWGQPQQPQAAQQFSGGGAPAARSSAPAPQT
NEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=681191 M1F24_RS02460 WP_140172640.1 588015..588536(+) (ssb) [Providencia sp. PROV083]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACCTAGGACAAGATCCAGAAATCCGTTATATGCCTAACGG
CGGAGCTGTGGCAAACCTGACTCTGGCAACTTCTGAAAGTTGGCGTGACAAGCAAACCGGTGAGATGCGTGAAAAAACCG
AATGGCACCGCGTGGTTATTTTCGGCAAATTAGCGGAAGTGGCAGGTGAATACCTGAAAAAAGGTTCACAAGTCTATATC
GAAGGTTCTCTGCAAACACGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACACGACAGAAGTGGTTGTGAATATCGG
CGGCTCAATGCAAATGCTAGGTGGCCGTGGCGGTGATGCAGCATCACAAGGTCAAGGCAGCCAAGGCGGTTGGGGCCAAC
CTCAACAGCCGCAAGCAGCACAGCAATTTAGTGGTGGCGGAGCTCCAGCCGCACGCTCATCAGCGCCTGCTCCACAGACT
AATGAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.111

100

0.74
  ssb Glaesserella parasuis strain SC1401

57.143

100

0.624
  ssb Neisseria meningitidis MC58

48.023

100

0.491
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.491
  ssb Latilactobacillus sakei subsp. sakei 23K

35

100

0.364