Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   M1E96_RS02500 Genome accession   NZ_CP096297
Coordinates   593879..594397 (+) Length   172 a.a.
NCBI ID   WP_140179013.1    Uniprot ID   -
Organism   Providencia sp. PROV236     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 588879..599397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1E96_RS02490 - 589420..590616 (+) 1197 WP_070927205.1 amino acid aminotransferase -
  M1E96_RS02495 uvrA 590703..593537 (-) 2835 WP_070927203.1 excinuclease ABC subunit UvrA -
  M1E96_RS02500 ssb 593879..594397 (+) 519 WP_140179013.1 single-stranded DNA-binding protein Machinery gene
  M1E96_RS02505 - 594803..595210 (-) 408 WP_070927573.1 helix-turn-helix domain-containing protein -
  M1E96_RS02510 - 595579..596226 (-) 648 WP_272581099.1 N-acetyltransferase -
  M1E96_RS02515 - 596309..596899 (+) 591 WP_272581098.1 TetR/AcrR family transcriptional regulator -
  M1E96_RS02520 - 596972..598138 (-) 1167 WP_272581097.1 MFS transporter -
  M1E96_RS02525 ivbL 598471..598566 (+) 96 WP_101495238.1 ilvB operon leader peptide IvbL -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18429.39 Da        Isoelectric Point: 4.9468

>NTDB_id=680974 M1E96_RS02500 WP_140179013.1 593879..594397(+) (ssb) [Providencia sp. PROV236]
MASRGVNKVILIGNLGQDPEIRYMPNGGAVANLTLATSESWRDKQTGEMREKTEWHRVVIFGKLAEVAGEYLKKGSQVYI
EGSLQTRKWQDQSGQDRYTTEVVVNIGGSMQMLGGRGGDSSGQSQGGQGGWGQPQQPAAAQQFSGGGAPARSQAPAPQSS
EPPMDFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=680974 M1E96_RS02500 WP_140179013.1 593879..594397(+) (ssb) [Providencia sp. PROV236]
ATGGCCAGCAGAGGCGTAAATAAAGTAATTCTTATCGGTAACTTGGGGCAAGATCCTGAAATCCGTTACATGCCTAACGG
CGGTGCTGTGGCAAACCTAACTCTGGCAACTTCTGAAAGCTGGCGCGATAAGCAAACCGGTGAAATGCGTGAAAAAACCG
AATGGCACCGTGTAGTGATTTTCGGAAAATTAGCTGAAGTTGCAGGCGAATACCTGAAAAAAGGCTCACAAGTTTACATT
GAAGGTTCTTTGCAAACACGTAAGTGGCAAGATCAAAGTGGTCAAGATCGTTACACCACAGAAGTGGTTGTTAATATTGG
CGGTTCAATGCAAATGTTAGGTGGCCGTGGCGGTGATTCATCAGGCCAAAGTCAAGGTGGTCAAGGTGGTTGGGGTCAAC
CTCAGCAACCAGCGGCAGCTCAGCAATTCAGTGGCGGCGGGGCTCCAGCACGTTCACAAGCTCCAGCTCCACAAAGTAGT
GAACCACCAATGGATTTCGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.067

100

0.75
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.622
  ssb Neisseria meningitidis MC58

47.753

100

0.494
  ssb Neisseria gonorrhoeae MS11

47.753

100

0.494
  ssb Latilactobacillus sakei subsp. sakei 23K

34.444

100

0.36