Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PALA37_RS07545 Genome accession   NZ_CP109850
Coordinates   1623759..1624256 (-) Length   165 a.a.
NCBI ID   WP_270134954.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1618759..1629256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA37_RS07525 (PALA37_01494) pchD 1619543..1621186 (+) 1644 WP_270134950.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  PALA37_RS07530 (PALA37_01495) pchC 1621183..1621938 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  PALA37_RS07535 (PALA37_01496) pchB 1621938..1622243 (+) 306 WP_031285628.1 isochorismate lyase PchB -
  PALA37_RS07540 (PALA37_01497) pchA 1622240..1623670 (+) 1431 WP_270134952.1 isochorismate synthase PchA -
  PALA37_RS07545 (PALA37_01498) ssb 1623759..1624256 (-) 498 WP_270134954.1 single-stranded DNA-binding protein Machinery gene
  PALA37_RS07550 (PALA37_01499) - 1624273..1625661 (-) 1389 WP_009316331.1 MFS transporter -
  PALA37_RS07555 (PALA37_01500) uvrA 1625875..1628712 (+) 2838 WP_023127008.1 excinuclease ABC subunit UvrA Machinery gene
  PALA37_RS07560 (PALA37_01501) bfr 1628784..1629248 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18588.47 Da        Isoelectric Point: 5.2781

>NTDB_id=680699 PALA37_RS07545 WP_270134954.1 1623759..1624256(-) (ssb) [Pseudomonas aeruginosa strain PALA37]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAQQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=680699 PALA37_RS07545 WP_270134954.1 1623759..1624256(-) (ssb) [Pseudomonas aeruginosa strain PALA37]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCAGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.333

100

0.636
  ssb Glaesserella parasuis strain SC1401

51.934

100

0.57
  ssb Neisseria meningitidis MC58

46.409

100

0.509
  ssb Neisseria gonorrhoeae MS11

46.927

100

0.509