Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   PALA37_RS07555 Genome accession   NZ_CP109850
Coordinates   1625875..1628712 (+) Length   945 a.a.
NCBI ID   WP_023127008.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA37     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1620875..1633712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA37_RS07530 (PALA37_01495) pchC 1621183..1621938 (+) 756 WP_003114687.1 pyochelin biosynthesis editing thioesterase PchC -
  PALA37_RS07535 (PALA37_01496) pchB 1621938..1622243 (+) 306 WP_031285628.1 isochorismate lyase PchB -
  PALA37_RS07540 (PALA37_01497) pchA 1622240..1623670 (+) 1431 WP_270134952.1 isochorismate synthase PchA -
  PALA37_RS07545 (PALA37_01498) ssb 1623759..1624256 (-) 498 WP_270134954.1 single-stranded DNA-binding protein Machinery gene
  PALA37_RS07550 (PALA37_01499) - 1624273..1625661 (-) 1389 WP_009316331.1 MFS transporter -
  PALA37_RS07555 (PALA37_01500) uvrA 1625875..1628712 (+) 2838 WP_023127008.1 excinuclease ABC subunit UvrA Machinery gene
  PALA37_RS07560 (PALA37_01501) bfr 1628784..1629248 (-) 465 WP_003093668.1 bacterioferritin -
  PALA37_RS07565 (PALA37_01502) katA 1629379..1630827 (-) 1449 WP_003103909.1 catalase KatA -
  PALA37_RS07570 (PALA37_01503) rplQ 1631108..1631497 (-) 390 WP_003093672.1 50S ribosomal protein L17 -
  PALA37_RS07575 (PALA37_01504) - 1631541..1632542 (-) 1002 WP_003093675.1 DNA-directed RNA polymerase subunit alpha -
  PALA37_RS07580 (PALA37_01505) rpsD 1632565..1633185 (-) 621 WP_003093678.1 30S ribosomal protein S4 -
  PALA37_RS07585 (PALA37_01506) rpsK 1633202..1633591 (-) 390 WP_003093689.1 30S ribosomal protein S11 -

Sequence

Protein


Download         Length: 945 a.a.        Molecular weight: 104461.07 Da        Isoelectric Point: 6.6074

>NTDB_id=680700 PALA37_RS07555 WP_023127008.1 1625875..1628712(+) (uvrA) [Pseudomonas aeruginosa strain PALA37]
MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDEMRAQGFVRARVDGKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALVAPMDED
EDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARRVVNGELTLAEGAIRGWDRRNVYYFQM
LGSLAQHYGFSLEEPFDELGAEHQKAVLYGSGRENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELAKF
LSTQPCPDCHGTRLRREARHVWVGDRTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQFLVNVGLDYLTL
DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLTHLRNLGNTVIVVEHDEDAIRLADYVVDI
GPGAGVHGGQVVAEGTPDQVMNHPDSLTGKYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCITG
VSGSGKSTLINNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPE
ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEIRYKGKSIHEVLEMTIEEAREFF
DAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRD
HGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFLKPLLERDRA

Nucleotide


Download         Length: 2838 bp        

>NTDB_id=680700 PALA37_RS07555 WP_023127008.1 1625875..1628712(+) (uvrA) [Pseudomonas aeruginosa strain PALA37]
GTGGATAAGATCCTGATTCGTGGGGCGCGTACCCACAACCTGAAGAACGTCGACCTCACACTGCCACGCGACAAACTGAT
CGTGATCACCGGTCTTTCCGGTTCCGGCAAGTCTTCCCTGGCTTTCGACACGCTCTATGCGGAAGGCCAGCGGCGCTACG
TGGAATCCCTCTCGGCCTACGCCCGGCAGTTCCTGTCGATGATGGAGAAGCCGGACGTGGACACCATCGAAGGGCTGTCG
CCGGCGATTTCCATCGAACAGAAGTCCACTTCCCACAACCCACGCTCCACCGTGGGTACGATCACCGAGATCTACGACTA
CCTGCGCCTCCTCTACGCCCGCGTCGGCACCCCGCGCTGCCCGGACCACGACATCCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTCCTGGCCCTGCCGGAAGGCAGCAAGCTGATGCTGCTGGCGCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGACGAGATGCGCGCGCAGGGCTTCGTCCGCGCCCGGGTCGACGGCAAGCTCTACGAACTCGA
CGAAGTGCCGAAGCTGGACAAGCAGAAGAAGCACAGCATCGATGTGGTGGTGGACCGCTTCAAGGTTCGCGCGGACCTCC
AGCAACGCCTGGCCGAGTCGTTCGAGACCGCCCTGTCCCTGGCCGACGGTATCGCCCTGGTGGCGCCGATGGACGAGGAC
GAGGATGTCGAGGAGATCATCTTCTCGGCACGCTTCGCCTGCCCGGTCTGCGGCCACTCGATCAGCGAGCTGGAACCCAA
GCTGTTCTCCTTCAACAACCCGGCCGGCGCCTGCCCGACCTGCGACGGCCTCGGCGTGAAGCAATTCTTCGACGCGCGCC
GGGTGGTCAATGGCGAGTTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACCGGCGCAACGTCTATTACTTCCAGATG
CTCGGCTCGCTGGCCCAGCATTACGGCTTCAGCCTGGAAGAACCCTTCGACGAACTCGGCGCCGAGCACCAGAAGGCGGT
GCTCTACGGCTCCGGCCGGGAAAACGTCGACTTCCGCTATCTCAACGACCGCGGCGACATCGTCAAGCGTTCGCATCCCT
TCGAAGGCATCCTGCCGAACCTTGAGCGGCGCTACCGCGAGACCGAGTCGGCCACGGTCCGCGAGGAACTGGCCAAGTTC
CTCAGCACCCAGCCCTGCCCGGATTGCCACGGTACCCGCCTGCGCCGCGAGGCGCGGCATGTGTGGGTCGGCGACCGGAC
GCTGCCGGCGATCACCGCGATGCCGGTCGGCGAGGCCTGCGAGTATGCCGCCGGACTCAGCCTGACCGGCCGCCGTGGCG
AGATCGCGGCGAAGATCCTCAAGGAAATCCGCGACCGCCTGCAATTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTC
GACCGCAGCGCCGACACCCTGTCCGGCGGCGAAGCCCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCTGGTGGG
AGTGATGTACATCCTCGACGAACCCTCGATCGGCCTGCACCAACGCGACAACGAACGCCTGCTCGGCACCCTCACCCACC
TGCGCAACCTCGGCAACACGGTGATCGTGGTCGAGCACGACGAGGACGCGATCCGACTCGCCGACTACGTCGTCGACATC
GGTCCGGGCGCCGGTGTGCACGGCGGCCAGGTAGTGGCGGAAGGTACGCCCGACCAGGTGATGAACCACCCCGACTCGCT
GACCGGCAAGTACCTTTCCGGGCGCAAGAAAATCGCGGTTCCGGCCAAGCGCACCCCGCGCGACAAGAAGAAGCTGCTGA
AGCTGAAAGGCGCCCGCGGCAACAACCTGCAGAACGTCAACCTGGAAATCCCGGTCGGCCTGTTCACCTGCATCACCGGA
GTCTCGGGCTCCGGCAAGTCGACGCTGATCAACAACACCCTGTTCCCGATCACCGCCACCGCGCTGAACGGCGCGACTAC
CCTGGAAGTGGCGCCGTACGACTCGTTCGACGGCCTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATCG
GTCGTACCCCGCGCTCCAACCCGGCGACCTATACCGGCCTGTTCACGCCGATCCGCGAACTGTTCTCCGGCGTGCCGGAG
GCCCGCTCGCGCGGCTACGGTCCCGGCCGCTTCTCGTTCAACGTCAAGGGCGGCCGTTGCGAGGCCTGCCAGGGCGACGG
CGTGATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTTCCCTGCGATGTCTGCAAGGGCAAGCGCTACAACCGCG
AGACCCTGGAGATCCGCTACAAGGGCAAGAGCATCCACGAAGTGCTGGAGATGACCATCGAGGAAGCCCGCGAGTTCTTC
GACGCCGTTCCCGCCCTGGCGCGCAAGCTGCAGACACTGATGGACGTCGGCCTGTCCTACATCAAGCTGGGCCAGAGCGC
GACCACCCTCTCGGGCGGCGAGGCGCAGCGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGCGACACCGGCAAGACCCTGT
ACATCCTCGACGAACCGACCACCGGCCTGCACTTCGCCGACATCCAGCAACTGCTCGACGTGCTCCACCGCCTGCGCGAC
CACGGCAACACCGTGGTGGTGATCGAGCACAACCTGGACGTGATCAAGACCGCCGACTGGCTGGTCGACCTCGGCCCCGA
GGGCGGCTCCAAGGGTGGTCAGATCATCGCCAACGGTACGCCGGAGCAGGTGGCCGAGATGCCCCAGTCGCACACCGGCC
ACTTCCTCAAGCCGCTGCTGGAACGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-399)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.233

100

0.574
  uvrA Streptococcus pneumoniae TIGR4

57.233

100

0.574
  uvrA Streptococcus pneumoniae D39

57.233

100

0.574