Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MY052_RS23370 Genome accession   NZ_CP096201
Coordinates   4890595..4892115 (+) Length   506 a.a.
NCBI ID   WP_035896408.1    Uniprot ID   A0AB35X8D4
Organism   Kluyvera ascorbata strain SK     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4885595..4897115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY052_RS23350 (MY052_23350) - 4887147..4888076 (-) 930 WP_202216821.1 branched-chain amino acid transaminase -
  MY052_RS23355 (MY052_23355) ilvM 4888094..4888360 (-) 267 WP_035896406.1 acetolactate synthase 2 small subunit -
  MY052_RS23360 (MY052_23360) ilvG 4888357..4890003 (-) 1647 WP_248537947.1 acetolactate synthase 2 catalytic subunit -
  MY052_RS23365 (MY052_23365) ilvL 4890143..4890241 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MY052_RS23370 (MY052_23370) comM 4890595..4892115 (+) 1521 WP_035896408.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MY052_RS23375 (MY052_23375) - 4892140..4892478 (-) 339 WP_035896409.1 DUF413 domain-containing protein -
  MY052_RS23380 (MY052_23380) hdfR 4892597..4893415 (+) 819 WP_035896410.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55169.51 Da        Isoelectric Point: 7.3362

>NTDB_id=680293 MY052_RS23370 WP_035896408.1 4890595..4892115(+) (comM) [Kluyvera ascorbata strain SK]
MSLSVVYTRAALGVNAPLITIEVHISQGLPGLVMVGLPETTVKESRDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLSTQKLGQYEFVGELALTGALRGIPGAISAAMEAINAGRQIVLAEDDAPLVGLLGGNDCLIASHL
LEVCAFLEGKQELRLPPAETPVITEAADDLSEVIGQQQGKRALEVTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLNDR
EALESAAIISLENSRRVQAEWRCRPFRAPHHSASLTAMVGGGSIPAPGEVSLAHNGILFLDELPEFERRVLDALREPIES
GKIHISRTRAKITYPARFQLIAAMNPSPTGHYEGKHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPMPPPGLLSQPVRLE
ESSREVQRRVIAAHQRQFTRQGKLNAHLGSGEARLHCALCDEDSRWLEQTLTQLGLSIRAWQRLLKVARTLADMEGVDAI
ERRHLQEALSYRGIDRMLSHLQTLLQ

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=680293 MY052_RS23370 WP_035896408.1 4890595..4892115(+) (comM) [Kluyvera ascorbata strain SK]
ATGTCACTATCCGTCGTCTATACGCGTGCAGCGCTCGGCGTGAATGCGCCACTCATTACCATTGAAGTGCATATCAGCCA
GGGGCTGCCGGGGCTGGTGATGGTGGGTCTGCCGGAAACGACCGTCAAAGAGTCCCGGGATCGGGTTCGCAGCGCAATCA
TCAACAGCGGTTATACCTTCCCGGCGAAAAAAATCACCATCAACCTGGCTCCCGCCGACCTGCCGAAAGAAGGCGGTCGA
TATGATTTACCTATCGCTATTGCGCTCCTGGCGGCTTCTGAGCAGCTTAGCACCCAGAAACTGGGTCAATATGAGTTCGT
GGGGGAATTAGCGCTTACAGGCGCATTACGCGGCATTCCTGGAGCCATCTCTGCGGCAATGGAGGCCATCAACGCCGGGC
GGCAGATAGTACTTGCTGAAGACGATGCCCCGTTGGTTGGGCTGCTAGGCGGCAACGATTGTCTTATCGCAAGCCATCTT
CTGGAAGTGTGTGCGTTTCTGGAAGGGAAGCAGGAATTGCGCCTCCCACCTGCGGAGACACCTGTAATTACCGAGGCGGC
TGACGACCTGAGTGAAGTCATCGGGCAGCAGCAGGGGAAGCGCGCGTTAGAGGTGACGGCGGCGGGCGGGCATAATTTAT
TGCTGATAGGCCCACCGGGCACCGGCAAAACCATGCTCGCTTCCAGGCTCAGAGGTCTACTACCACCGCTTAACGATCGC
GAGGCGCTGGAAAGCGCCGCTATCATCAGTCTGGAAAATAGTCGCCGCGTGCAGGCCGAGTGGCGCTGCCGCCCTTTTCG
CGCACCGCACCATAGCGCCTCGTTAACGGCAATGGTGGGCGGAGGGTCAATACCTGCCCCTGGAGAGGTCTCTCTGGCCC
ATAACGGCATTCTATTTCTGGATGAACTGCCGGAGTTTGAACGTCGGGTGCTGGATGCGTTAAGAGAGCCTATCGAGTCG
GGTAAGATCCATATTTCACGGACGCGCGCCAAAATCACCTACCCTGCTCGCTTCCAGCTGATTGCTGCCATGAATCCCAG
CCCAACCGGACACTATGAGGGAAAGCACAATCGCTGCACGCCAGAACAGACGCTGCGCTATCTCAACCGTCTGTCAGGGC
CTTTCCTCGACCGTTTCGATTTATCGCTCGAGATACCCATGCCTCCGCCAGGATTGCTAAGCCAACCCGTTCGTCTCGAA
GAGAGTAGTCGGGAGGTACAGCGTCGCGTGATTGCTGCCCATCAGCGTCAGTTTACTCGGCAGGGGAAGCTTAATGCCCA
TCTCGGTAGCGGTGAGGCAAGGCTGCATTGCGCCCTTTGCGATGAGGATTCACGGTGGTTGGAACAGACGCTCACACAAC
TGGGGCTTTCGATACGTGCCTGGCAGCGGCTACTTAAGGTTGCACGCACGTTGGCCGATATGGAGGGCGTTGACGCCATC
GAGCGTCGACATTTGCAGGAAGCGTTAAGCTACCGTGGGATTGATCGCATGCTTAGCCACCTGCAAACCTTACTGCAATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

57.54

99.605

0.573
  comM Vibrio cholerae strain A1552

57.455

99.407

0.571
  comM Haemophilus influenzae Rd KW20

56.445

100

0.571
  comM Glaesserella parasuis strain SC1401

56.805

100

0.569
  comM Legionella pneumophila str. Paris

47.782

98.024

0.468
  comM Legionella pneumophila strain ERS1305867

47.782

98.024

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.11

100

0.433