Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MY052_RS22385 Genome accession   NZ_CP096201
Coordinates   4680177..4680704 (-) Length   175 a.a.
NCBI ID   WP_035896752.1    Uniprot ID   A0A378GVM1
Organism   Kluyvera ascorbata strain SK     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4675177..4685704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY052_RS22365 (MY052_22365) - 4675250..4675993 (-) 744 WP_035895938.1 IclR family transcriptional regulator -
  MY052_RS22370 (MY052_22370) - 4676261..4676965 (-) 705 WP_248537884.1 GntR family transcriptional regulator -
  MY052_RS22375 (MY052_22375) oxlT 4676980..4678296 (-) 1317 WP_416337396.1 oxalate/formate MFS antiporter -
  MY052_RS22380 (MY052_22380) - 4678331..4679938 (-) 1608 WP_248537886.1 gamma-glutamyltransferase family protein -
  MY052_RS22385 (MY052_22385) ssb 4680177..4680704 (-) 528 WP_035896752.1 single-stranded DNA-binding protein SSB1 Machinery gene
  MY052_RS22390 (MY052_22390) uvrA 4680959..4683784 (+) 2826 WP_123652245.1 excinuclease ABC subunit UvrA -
  MY052_RS22395 (MY052_22395) - 4683785..4684138 (-) 354 WP_123652258.1 MmcQ/YjbR family DNA-binding protein -
  MY052_RS22400 (MY052_22400) aphA 4684271..4684984 (-) 714 WP_035896755.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18748.76 Da        Isoelectric Point: 5.2456

>NTDB_id=680291 MY052_RS22385 WP_035896752.1 4680177..4680704(-) (ssb) [Kluyvera ascorbata strain SK]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=680291 MY052_RS22385 WP_035896752.1 4680177..4680704(-) (ssb) [Kluyvera ascorbata strain SK]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAACCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGACAAAGCGACCGGTGAAATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAGCTGGCGGAAGTAGCAGGCGAATACCTGCGTAAAGGCTCTCAGGTTTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAAAAATACACTACTGAAGTCGTGGTTAACGTAGG
TGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGCAGGGCGGTTGGG
GTCAGCCTCAGCAGCCACAGGGCGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGCAGTCCGCTCCGGCA
CCGTCTAACGAACCGCCGATGGACTTCGATGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378GVM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.556

100

0.777
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.6
  ssb Neisseria meningitidis MC58

47.191

100

0.48
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.48
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.371