Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MTO69_RS01655 Genome accession   NZ_CP096199
Coordinates   340738..341271 (+) Length   177 a.a.
NCBI ID   WP_248330539.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 335738..346271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS01645 (MTO69_01645) galU 338639..339514 (-) 876 WP_248330535.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MTO69_RS01650 (MTO69_01650) qstR 339811..340458 (-) 648 WP_248330537.1 response regulator transcription factor Regulator
  MTO69_RS01655 (MTO69_01655) ssb 340738..341271 (+) 534 WP_248330539.1 single-stranded DNA-binding protein Machinery gene
  MTO69_RS01660 (MTO69_01660) csrD 341464..343473 (+) 2010 WP_248330541.1 RNase E specificity factor CsrD -
  MTO69_RS01665 (MTO69_01665) - 343473..344957 (+) 1485 WP_248330543.1 MSHA biogenesis protein MshI -
  MTO69_RS01670 (MTO69_01670) pilO 344957..345607 (+) 651 WP_248334250.1 type 4a pilus biogenesis protein PilO -
  MTO69_RS01675 (MTO69_01675) - 345597..345923 (+) 327 WP_248330545.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19485.61 Da        Isoelectric Point: 5.7626

>NTDB_id=680244 MTO69_RS01655 WP_248330539.1 340738..341271(+) (ssb) [Vibrio sinaloensis strain YA2]
MASRGVNKVILVGNLGTDPEVRYMPSGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQNGQDRYTTEVVVQGYNGVMQMLGGRAQGGAPGQGMGQSQPQQGGWGQPQQPAMQHQPAQQPQSQPQQA
KPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=680244 MTO69_RS01655 WP_248330539.1 340738..341271(+) (ssb) [Vibrio sinaloensis strain YA2]
ATGGCTAGCCGTGGAGTGAACAAAGTTATTTTAGTCGGTAATCTGGGCACTGACCCAGAGGTGCGTTACATGCCTAGTGG
CGGCGCAGTGGCCAATATTACCATTGCAACGTCTGAATCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACCG
AGTGGCACCGTGTTGCACTGTTTGGCAAGTTGGCTGAAGTTGCTGGTGAGTACCTACGCAAGGGTTCACAAGTTTACGTG
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAGAATGGTCAAGACCGCTACACGACAGAGGTTGTGGTACAAGGTTA
CAATGGCGTGATGCAAATGCTGGGTGGCCGTGCACAAGGTGGTGCACCAGGACAAGGCATGGGCCAGTCTCAACCACAGC
AAGGTGGTTGGGGGCAGCCACAACAGCCTGCTATGCAGCATCAACCTGCTCAGCAACCTCAGTCTCAACCGCAGCAAGCT
AAGCCTCAGTACAATGAGCCACCAATGGATTTTGATGACGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

84.358

100

0.853
  ssb Glaesserella parasuis strain SC1401

56.842

100

0.61
  ssb Neisseria meningitidis MC58

47.541

100

0.492
  ssb Neisseria gonorrhoeae MS11

47.541

100

0.492