Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   MTO69_RS01650 Genome accession   NZ_CP096199
Coordinates   339811..340458 (-) Length   215 a.a.
NCBI ID   WP_248330537.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 334811..345458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS01640 (MTO69_01640) uvrA 335680..338505 (-) 2826 WP_248330533.1 excinuclease ABC subunit UvrA -
  MTO69_RS01645 (MTO69_01645) galU 338639..339514 (-) 876 WP_248330535.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  MTO69_RS01650 (MTO69_01650) qstR 339811..340458 (-) 648 WP_248330537.1 response regulator transcription factor Regulator
  MTO69_RS01655 (MTO69_01655) ssb 340738..341271 (+) 534 WP_248330539.1 single-stranded DNA-binding protein Machinery gene
  MTO69_RS01660 (MTO69_01660) csrD 341464..343473 (+) 2010 WP_248330541.1 RNase E specificity factor CsrD -
  MTO69_RS01665 (MTO69_01665) - 343473..344957 (+) 1485 WP_248330543.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24933.00 Da        Isoelectric Point: 9.8316

>NTDB_id=680243 MTO69_RS01650 WP_248330537.1 339811..340458(-) (qstR) [Vibrio sinaloensis strain YA2]
MARNIYTRTISFVCEDPEVHYPFIDQLENKLGISILRIKPSELLLALQKHKHRILLIDHHNYTRLKSQVRDLPLADRTFE
TLVFNVQQRLTTDEVLAFGHLKGIFYKDTNIDMIVRGCEAVINGENWLPRKVTAQLLFHYRSIIDTQTTPATVDLTAREI
QILRCLMDGASNIQIADNMFISEFTVKSHLQKIFKKLGAKNRVQAAAWAKQHMRH

Nucleotide


Download         Length: 648 bp        

>NTDB_id=680243 MTO69_RS01650 WP_248330537.1 339811..340458(-) (qstR) [Vibrio sinaloensis strain YA2]
ATGGCTAGAAACATCTATACCCGAACCATCTCATTTGTTTGTGAAGACCCAGAGGTTCACTACCCCTTCATTGACCAGCT
CGAAAACAAGTTAGGCATTTCCATCCTGCGTATCAAGCCGAGCGAACTATTGCTCGCACTGCAAAAACACAAGCATCGTA
TTTTGTTGATTGATCATCACAACTATACCCGACTCAAGAGCCAGGTTCGCGACCTACCTTTAGCTGACAGAACCTTTGAG
ACCTTGGTGTTCAATGTCCAGCAGCGATTGACTACCGACGAAGTACTGGCCTTTGGTCACCTGAAAGGCATTTTCTACAA
AGACACCAACATCGATATGATAGTGCGCGGCTGCGAGGCGGTGATCAATGGCGAAAACTGGCTACCAAGAAAAGTGACCG
CTCAGCTACTGTTCCATTACCGCAGTATCATTGATACCCAAACCACGCCAGCGACCGTTGACCTCACTGCTCGTGAAATT
CAGATTCTGCGCTGCTTGATGGATGGTGCCTCTAACATTCAAATCGCCGACAACATGTTTATCAGCGAGTTTACCGTTAA
ATCGCATCTACAAAAAATCTTCAAAAAGCTTGGCGCGAAAAACCGTGTTCAAGCCGCAGCCTGGGCCAAACAACATATGC
GCCATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

50.704

99.07

0.502
  qstR Vibrio cholerae strain A1552

49.765

99.07

0.493
  qstR Vibrio parahaemolyticus RIMD 2210633

48.826

99.07

0.484