Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MTO69_RS00110 Genome accession   NZ_CP096199
Coordinates   25682..27205 (+) Length   507 a.a.
NCBI ID   WP_248330034.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 20682..32205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS00095 (MTO69_00095) ilvE 22308..23255 (-) 948 WP_248330028.1 branched-chain-amino-acid transaminase -
  MTO69_RS00100 (MTO69_00100) ilvM 23268..23552 (-) 285 WP_248330030.1 acetolactate synthase 2 small subunit -
  MTO69_RS00105 (MTO69_00105) ilvG 23554..25200 (-) 1647 WP_248330032.1 acetolactate synthase 2 catalytic subunit -
  MTO69_RS00110 (MTO69_00110) comM 25682..27205 (+) 1524 WP_248330034.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MTO69_RS00115 (MTO69_00115) - 27234..28211 (-) 978 WP_248330035.1 DUF2860 domain-containing protein -
  MTO69_RS00120 (MTO69_00120) - 28388..29269 (+) 882 WP_248330037.1 acyltransferase -
  MTO69_RS00125 (MTO69_00125) - 29303..29893 (-) 591 WP_248330039.1 thiol:disulfide interchange protein DsbA/DsbL -
  MTO69_RS00130 (MTO69_00130) - 29923..30909 (-) 987 WP_248334482.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55010.92 Da        Isoelectric Point: 7.6561

>NTDB_id=680238 MTO69_RS00110 WP_248330034.1 25682..27205(+) (comM) [Vibrio sinaloensis strain YA2]
MGLAVIHSRACVGVEAPSVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIPLSDLHHQEFVGELALSGELRRVKGVLPAALAANHAQRQLVVPMDNSGQAALVGRDRHKSAQSL
LEVCADLAGQQRLGLHPSLVPEKTGSSSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
QEALETASVASLTQQEINEHNWKSRPFRAPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRVNPQSILRYLSRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTEVVRQRVLTARATMLSRAGKVNALLGSREIETYCPLHKQDAEFLESALHRLGLSIRAYHRIIKVARTIADLEGGAD
IERHHLAEALGYRSMDRLLRQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=680238 MTO69_RS00110 WP_248330034.1 25682..27205(+) (comM) [Vibrio sinaloensis strain YA2]
ATGGGGTTAGCAGTGATTCACAGCCGAGCTTGTGTCGGGGTTGAAGCGCCATCAGTGACGGTGGAAGTACACATTAGTAA
TGGGATGCCTGGTTTTACTTTGGTCGGTTTGCCAGAGACGACGGTTAAAGAGTCGCGCGATCGAGTGCGTAGTGCCATCA
TTAATTCCCGCTTTGAGTTTCCCGCAAAGCGGATTACGGTCAATTTGGCGCCCGCAGATTTACCCAAAGAGGGAGGGCGA
TTTGATTTGCCGATTGCGTTGGGTATTTTGGCTGCGTCAGAGCAGATCCCGCTCAGTGATTTGCATCATCAAGAGTTTGT
TGGTGAATTAGCGTTGTCAGGTGAGTTGCGCCGAGTTAAAGGGGTGTTGCCTGCTGCATTGGCGGCCAATCATGCCCAAA
GGCAGTTGGTGGTGCCGATGGATAACAGTGGGCAAGCGGCGTTGGTTGGCCGCGATAGACATAAATCTGCACAGAGTTTG
CTCGAGGTGTGCGCCGATTTAGCGGGGCAGCAGCGTTTGGGACTGCACCCCAGTCTCGTGCCTGAGAAAACCGGTTCGTC
TTCCCGTGACTTGCAAGACATTATCGGACAGCAGCAAGGTAAGCGAGCGTTAGAGATTGCGGCGGCAGGCAACCATAACT
TGTTGTTTTTAGGCCCACCAGGCACCGGAAAAACCATGCTGGCGTCGAGGCTGTGCGATTTACTGCCGGAAATGAGCGAT
CAAGAAGCGCTAGAGACCGCATCGGTGGCATCGCTGACGCAGCAAGAGATCAATGAGCACAATTGGAAGTCGCGCCCGTT
TCGCGCACCGCATCATTCCAGTTCGATGGCGGCGTTGGTTGGCGGCGGCTCCATCCCTCGGCCGGGAGAGATCTCTTTGG
CTCACAATGGATTATTGTTTCTCGATGAGATGCCCGAATTCGAACGCAAAGTACTCGATTCGTTGCGTGAACCACTGGAA
TCTGGGGAGATCATCATTTCTCGCGCTCAAGGCAAAACCCGTTTTCCGGCTCGATTTCAGTTAGTTGGTGCGCTCAACCC
CAGCCCGACAGGTTACTATGAAGGCAATCAATCACGGGTAAACCCACAATCGATATTGCGCTATTTAAGCCGTTTGTCGG
GGCCGCTGTTGGACCGGTTTGACATGTCGTTGGAGATCCCTGCTTTGCCTAAAGGCACGTTAGCAGAAGGGGGCGACCGA
GGAGAGCCTACGGAGGTGGTTCGCCAGCGCGTTCTGACGGCGCGAGCAACCATGTTGTCTCGCGCTGGTAAGGTGAATGC
TCTGCTAGGCAGTCGAGAAATAGAGACCTACTGCCCATTGCATAAGCAAGACGCGGAGTTCTTGGAGAGTGCGCTGCACC
GTTTGGGTTTATCGATTCGGGCCTACCATCGCATCATTAAGGTGGCCCGAACCATTGCCGATTTAGAGGGCGGCGCCGAC
ATCGAGCGCCACCATCTAGCGGAGGCACTTGGCTATCGCTCGATGGATAGGCTGCTGCGGCAATTAACTGCGCAAGCGGT
TTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

85.404

100

0.854
  comM Vibrio campbellii strain DS40M4

84.615

100

0.846
  comM Haemophilus influenzae Rd KW20

65.68

100

0.657
  comM Glaesserella parasuis strain SC1401

63.725

100

0.641
  comM Legionella pneumophila str. Paris

49.499

98.422

0.487
  comM Legionella pneumophila strain ERS1305867

49.499

98.422

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.094

100

0.442