Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | PALA25_RS23525 | Genome accession | NZ_CP109834 |
| Coordinates | 5074378..5074917 (-) | Length | 179 a.a. |
| NCBI ID | WP_003116248.1 | Uniprot ID | Q59651 |
| Organism | Pseudomonas aeruginosa strain PALA25 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5069378..5079917
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA25_RS23505 (PALA25_04690) | - | 5070062..5072317 (-) | 2256 | WP_016264271.1 | DUF1631 domain-containing protein | - |
| PALA25_RS23510 (PALA25_04691) | nadC | 5072603..5073451 (+) | 849 | WP_016562338.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PALA25_RS23520 (PALA25_04693) | - | 5073616..5074314 (-) | 699 | WP_023122772.1 | hypothetical protein | - |
| PALA25_RS23525 | pilE | 5074378..5074917 (-) | 540 | WP_003116248.1 | pilin | Machinery gene |
| PALA25_RS23530 (PALA25_04694) | pilB | 5075146..5076849 (+) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PALA25_RS23535 (PALA25_04695) | pilC | 5076853..5078070 (+) | 1218 | WP_003116250.1 | type II secretion system F family protein | Machinery gene |
| PALA25_RS23540 (PALA25_04696) | pilD | 5078073..5078945 (+) | 873 | WP_016562340.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PALA25_RS23545 (PALA25_04697) | coaE | 5078942..5079553 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PALA25_RS23550 (PALA25_04698) | yacG | 5079550..5079750 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 179 a.a. Molecular weight: 18003.27 Da Isoelectric Point: 4.6894
>NTDB_id=680057 PALA25_RS23525 WP_003116248.1 5074378..5074917(-) (pilE) [Pseudomonas aeruginosa strain PALA25]
MTAQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVTEGVGLAASAKTLIGDSSATAGELAASARVWNAQAGNAGAT
SKYVTSVQIAEATGEITVTFNAANVGNIPANSTLVFTPYVQNAAGAPTQLGASYASGVTGSIDWGCASDSNAVSSGTDRN
MPALTAGTLPARFAPSECR
MTAQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVTEGVGLAASAKTLIGDSSATAGELAASARVWNAQAGNAGAT
SKYVTSVQIAEATGEITVTFNAANVGNIPANSTLVFTPYVQNAAGAPTQLGASYASGVTGSIDWGCASDSNAVSSGTDRN
MPALTAGTLPARFAPSECR
Nucleotide
Download Length: 540 bp
>NTDB_id=680057 PALA25_RS23525 WP_003116248.1 5074378..5074917(-) (pilE) [Pseudomonas aeruginosa strain PALA25]
ATGACAGCTCAGAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATTCTTGCTGCCGTCGCTTT
GCCGGCATATCAGGATTACACCATTCGTGCTCGCGTGACAGAGGGGGTTGGCTTGGCTGCCAGCGCCAAGACGCTTATTG
GCGATAGCTCTGCCACTGCCGGTGAGCTAGCCGCTTCGGCAAGGGTCTGGAATGCTCAAGCCGGTAACGCCGGTGCTACC
AGTAAGTATGTGACCTCTGTACAAATTGCAGAGGCGACTGGTGAAATCACTGTTACTTTCAATGCCGCAAACGTGGGTAA
TATTCCGGCTAACTCTACCCTGGTATTTACTCCCTATGTGCAGAATGCTGCCGGTGCCCCGACTCAATTGGGTGCCAGTT
ATGCTTCCGGTGTGACTGGCTCTATTGACTGGGGTTGTGCATCGGACTCCAACGCGGTTTCCAGTGGTACCGACCGCAAT
ATGCCTGCCCTGACTGCAGGTACCCTGCCGGCTCGTTTCGCTCCTAGCGAATGCCGCTAA
ATGACAGCTCAGAAAGGCTTTACCTTGATCGAACTGATGATCGTGGTTGCGATCATCGGTATTCTTGCTGCCGTCGCTTT
GCCGGCATATCAGGATTACACCATTCGTGCTCGCGTGACAGAGGGGGTTGGCTTGGCTGCCAGCGCCAAGACGCTTATTG
GCGATAGCTCTGCCACTGCCGGTGAGCTAGCCGCTTCGGCAAGGGTCTGGAATGCTCAAGCCGGTAACGCCGGTGCTACC
AGTAAGTATGTGACCTCTGTACAAATTGCAGAGGCGACTGGTGAAATCACTGTTACTTTCAATGCCGCAAACGTGGGTAA
TATTCCGGCTAACTCTACCCTGGTATTTACTCCCTATGTGCAGAATGCTGCCGGTGCCCCGACTCAATTGGGTGCCAGTT
ATGCTTCCGGTGTGACTGGCTCTATTGACTGGGGTTGTGCATCGGACTCCAACGCGGTTTCCAGTGGTACCGACCGCAAT
ATGCCTGCCCTGACTGCAGGTACCCTGCCGGCTCGTTTCGCTCCTAGCGAATGCCGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
41.451 |
100 |
0.447 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
44.444 |
100 |
0.447 |
| pilA2 | Legionella pneumophila str. Paris |
42.373 |
98.883 |
0.419 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.808 |
98.883 |
0.413 |
| comP | Acinetobacter baylyi ADP1 |
38.889 |
100 |
0.391 |