Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OBG92_RS09110 Genome accession   NZ_CP109657
Coordinates   1935220..1937232 (+) Length   670 a.a.
NCBI ID   WP_003150902.1    Uniprot ID   A0A2R3IUR1
Organism   Pseudomonas aeruginosa strain Zw26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1930220..1942232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OBG92_RS09090 (OBG92_01797) - 1931108..1933105 (+) 1998 WP_033977396.1 polysaccharide biosynthesis protein -
  OBG92_RS09095 (OBG92_01798) comE1/comEA 1933296..1933619 (+) 324 WP_003150898.1 ComEA family DNA-binding protein Machinery gene
  OBG92_RS09105 (OBG92_01800) - 1933837..1935033 (-) 1197 WP_012075040.1 amino acid aminotransferase -
  OBG92_RS09110 (OBG92_01801) uvrB 1935220..1937232 (+) 2013 WP_003150902.1 excinuclease ABC subunit UvrB Machinery gene
  OBG92_RS09115 (OBG92_01802) - 1937236..1938735 (-) 1500 WP_079383424.1 MDR family MFS transporter -
  OBG92_RS09120 (OBG92_01803) - 1938785..1939819 (-) 1035 WP_012075042.1 HlyD family secretion protein -
  OBG92_RS09125 (OBG92_01804) - 1939922..1940842 (+) 921 WP_033977391.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 670 a.a.        Molecular weight: 76069.29 Da        Isoelectric Point: 5.0933

>NTDB_id=679673 OBG92_RS09110 WP_003150902.1 1935220..1937232(+) (uvrB) [Pseudomonas aeruginosa strain Zw26]
MDTFQLDSRFKPAGDQPEAIRQMVEGLEAGLSHQTLLGVTGSGKTFSIANVIAQVQRPTLVLAPNKTLAAQLYGEFKTFF
PHNSVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDHIEQMRLSATKALLERPDAIIVATVSSIYGLGDPASYLKMVLHL
DRGDRIDQRELLRRLTSLQYTRNDMDFARATFRVRGDVIDIFPAESDLEAIRVELFDDEVESLSAFDPLTGEVIRKLPRF
TFYPKSHYVTPRETLLEAVDQIKAELKERLDYLRNNNKLVEAQRLEQRTRFDLEMILELGYCNGIENYSRYLSGRAPGEP
PPTLYDYLPANSLLVIDESHVSVPQVGAMFKGDRSRKETLVEYGFRLPSALDNRPLRFEEWEAVSPQTIFVSATPGPYEA
EHAGRVIEQVVRPTGLVDPEIEVRPAMTQVDDLLSQIRQRVAKDERVLVTTLTKRMAEDLTDYLGDHDVRVRYLHSDIDT
VERVEIIRDLRSGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADNVTGSMQ
RAIDETERRRAKQIAFNEAHGIVPKGVRKDIKDILEGAVVPGARGKRKGVAKVAEESGRYDNELRSPSEISKRIRQLEEK
MYQLARDLEFEAAAQLRDEIQTLRERLVNV

Nucleotide


Download         Length: 2013 bp        

>NTDB_id=679673 OBG92_RS09110 WP_003150902.1 1935220..1937232(+) (uvrB) [Pseudomonas aeruginosa strain Zw26]
ATGGATACGTTCCAACTCGACTCGCGCTTCAAGCCCGCCGGCGACCAGCCGGAGGCCATCCGGCAGATGGTCGAGGGGTT
GGAGGCGGGGCTTTCGCACCAGACCCTGCTCGGAGTGACGGGGTCGGGCAAGACCTTCAGCATCGCCAACGTGATCGCCC
AGGTGCAGCGCCCGACCCTGGTCCTGGCGCCGAACAAGACTCTGGCGGCCCAGCTCTACGGGGAGTTCAAGACGTTCTTT
CCGCATAATTCGGTGGAGTACTTCGTTTCCTACTACGACTACTACCAGCCGGAGGCCTACGTACCATCCTCCGATACCTA
TATCGAGAAGGACTCGTCGATAAACGACCACATCGAGCAGATGCGCCTGTCGGCGACCAAGGCGCTGCTCGAGCGGCCGG
ATGCGATCATCGTCGCCACCGTGTCGTCCATCTACGGCCTCGGCGACCCCGCCTCGTACCTGAAGATGGTCCTGCACCTG
GACCGCGGCGACCGCATCGACCAGCGTGAGCTGCTACGGCGCCTGACCAGCCTGCAGTACACCCGCAACGACATGGACTT
CGCCCGCGCGACCTTCCGTGTGCGTGGCGACGTGATCGACATCTTCCCGGCCGAATCCGATCTCGAGGCGATCCGTGTCG
AGCTGTTCGACGACGAAGTGGAAAGTCTCTCGGCCTTCGACCCGCTCACCGGCGAGGTGATCCGCAAGCTGCCGCGCTTC
ACCTTCTACCCCAAGAGCCACTACGTGACTCCGCGCGAGACGCTGCTGGAGGCGGTCGACCAGATCAAAGCCGAACTCAA
GGAACGCCTGGACTACCTGCGCAACAACAACAAGCTGGTGGAAGCGCAGCGCCTGGAGCAGCGCACGCGTTTCGACCTGG
AGATGATCCTCGAACTGGGCTACTGCAACGGCATCGAGAACTACTCGCGCTACCTTTCCGGGCGCGCCCCCGGCGAGCCG
CCGCCAACGCTCTATGACTACCTGCCGGCCAACTCGCTGCTGGTCATCGACGAATCGCACGTCAGCGTTCCGCAGGTCGG
CGCGATGTTCAAGGGCGACCGCTCGCGCAAGGAAACCCTGGTGGAATACGGTTTCCGTCTGCCTTCGGCTTTGGACAATC
GGCCGCTGCGCTTCGAAGAGTGGGAGGCGGTGAGTCCGCAGACCATCTTCGTTTCCGCGACCCCCGGGCCCTACGAGGCG
GAGCACGCCGGGCGGGTCATCGAACAGGTGGTACGACCCACCGGCCTGGTCGATCCGGAGATCGAGGTGCGCCCGGCGAT
GACCCAGGTCGACGACCTGCTGTCGCAGATCCGCCAGCGCGTGGCCAAGGACGAGCGGGTGCTGGTGACCACCCTGACCA
AGCGCATGGCCGAAGACCTCACCGATTATCTCGGCGATCACGACGTGCGGGTCCGCTACCTGCACTCGGACATCGATACC
GTCGAGCGGGTGGAGATCATCCGCGACCTGCGCTCCGGCGCCTTCGACGTGCTGGTGGGAATCAACCTCCTGCGCGAGGG
CCTGGACATGCCGGAGGTATCACTGGTGGCGATCCTCGACGCGGACAAGGAAGGTTTCCTGCGCTCGGAGCGCTCGCTGA
TCCAGACCATCGGTCGTGCCGCGCGCAACCTGCACGGCAAGGCGATTCTTTACGCCGACAACGTCACCGGCTCGATGCAG
CGCGCGATCGACGAGACCGAGCGGCGGCGGGCCAAGCAGATCGCCTTCAACGAAGCCCACGGCATCGTGCCCAAGGGTGT
GCGCAAGGACATCAAGGACATCCTCGAGGGCGCGGTGGTGCCCGGCGCGCGCGGCAAGCGCAAGGGCGTGGCCAAGGTCG
CGGAGGAGAGCGGGCGCTACGACAACGAACTGCGTTCGCCGAGCGAGATCAGCAAGCGCATCCGCCAGCTGGAGGAAAAG
ATGTACCAGTTGGCTCGCGACCTGGAGTTCGAAGCCGCGGCGCAACTGCGCGACGAGATCCAGACGCTGCGCGAGCGCCT
GGTCAACGTCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-248)

UvrB/uvrC motif (UVR)

(632-665)

Ultra-violet resistance protein B (UvrB)

(550-592)

Helicase conserved C-terminal domain (Helicase_C)

(435-542)

Type III restriction enzyme, res subunit (ResIII)

(11-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3IUR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.991

98.06

0.569
  uvrB Streptococcus pneumoniae R6

57.991

98.06

0.569
  uvrB Streptococcus pneumoniae D39

57.991

98.06

0.569