Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M0D47_RS13125 Genome accession   NZ_CP096140
Coordinates   3115668..3117188 (-) Length   506 a.a.
NCBI ID   WP_252161775.1    Uniprot ID   A0A9Q9IZR5
Organism   Xanthomonas prunicola strain MAI5037     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3110668..3122188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D47_RS13105 (M0D47_13085) - 3111388..3112509 (+) 1122 WP_252161771.1 acyl-CoA desaturase -
  M0D47_RS13110 (M0D47_13090) - 3112574..3114136 (-) 1563 WP_252161772.1 EAL domain-containing protein -
  M0D47_RS13115 (M0D47_13095) - 3114519..3114695 (+) 177 WP_252161773.1 hypothetical protein -
  M0D47_RS13120 (M0D47_13100) - 3114857..3115366 (-) 510 WP_252161774.1 lipocalin family protein -
  M0D47_RS13125 (M0D47_13105) comM 3115668..3117188 (-) 1521 WP_252161775.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M0D47_RS13130 (M0D47_13110) - 3117204..3117482 (-) 279 WP_064632685.1 accessory factor UbiK family protein -
  M0D47_RS13135 (M0D47_13115) - 3117636..3118010 (+) 375 WP_008574841.1 P-II family nitrogen regulator -
  M0D47_RS13140 (M0D47_13120) - 3118484..3120463 (+) 1980 WP_252161776.1 beta-N-acetylglucosaminidase domain-containing protein -
  M0D47_RS13145 (M0D47_13125) - 3120668..3121324 (-) 657 WP_252161777.1 RIO1 family regulatory kinase/ATPase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53947.67 Da        Isoelectric Point: 8.5251

>NTDB_id=679634 M0D47_RS13125 WP_252161775.1 3115668..3117188(-) (comM) [Xanthomonas prunicola strain MAI5037]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRGRVVAARQRQLTRGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDNSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=679634 M0D47_RS13125 WP_252161775.1 3115668..3117188(-) (comM) [Xanthomonas prunicola strain MAI5037]
ATGAGTCTGGCGCTGGTGCATAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCACGCGAGCGCGTACGTGCTGCCCTGC
TGTGCGCACAGTTCGAATTTCCCGCCCGGCGCATCACCATCAATCTGGCGCCGGCCGATTTACCGAAAGAAGGCGGCCGG
TTCGATTTACCGATCGCACTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTCACCGGCGAGCTGCGCGGCGTCGATGGCGTGCTGCCCGCGGCGCTAGCGGCCGCGCAGGCAGGGC
GACGATTGATTGTGCCGCTGGCCAACGGCGCCGAAGCCGCGATTGCCGGGCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTCGACGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCTGCCGCCGAGTTGGCGGTGCAGGCGCTCGGCGCCCGCGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCTTGCCAGGCCTATTGCCCGAAGCCAGCGAA
GCCGAAGCACTGGAAACAGCGGCCATTACGTCCATCAGCGGCCGCGGGCTGGATCTGGCCCGCTGGCGGCAGCGGCCGTA
TCGGGCTCCGCACCACACTGCCAGCGCAGTCGCGCTGGTGGGCGGTGGCACGCATCCGCGCCCCGGCGAGATTTCGCTCG
CCCACAACGGCGTCTTGTTCTTGGACGAATTGCCCGAGTGGCAACGACAAACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCGGGTCTGGTCACGATCTCACGCGCGGCGCGCAGCGTGGATTTCCCGGCACGCTTCCAACTGGTCGCGGCCATGAACCC
GTGCCCGTGCGGCTGGGCGGGCGATGGCAGCGGGCGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCGCCGCAGGCACTGCGAAGCGGCAAC
CTTGGCGAGGACAGCGCCAGCGTGCGTGGCCGCGTGGTCGCCGCACGGCAGCGCCAGCTTACGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGGCATTGCCGTCTGCAACACGACGATCAAGTGCTGCTTGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCCCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACAACAGCGCG
GACATCGCCACGCGCCATCTGACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCGGCCAGCGCGGCATA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.522

100

0.565
  comM Haemophilus influenzae Rd KW20

55.577

100

0.561
  comM Glaesserella parasuis strain SC1401

54.438

100

0.545
  comM Vibrio campbellii strain DS40M4

53.953

100

0.54
  comM Legionella pneumophila str. Paris

51.71

98.221

0.508
  comM Legionella pneumophila strain ERS1305867

51.71

98.221

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.458