Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   M0D45_RS09020 Genome accession   NZ_CP096139
Coordinates   2126890..2128410 (+) Length   506 a.a.
NCBI ID   WP_260815409.1    Uniprot ID   -
Organism   Xanthomonas prunicola strain MAI5069     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2121890..2133410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D45_RS09000 (M0D45_08990) - 2122754..2123410 (+) 657 WP_252161777.1 RIO1 family regulatory kinase/ATPase -
  M0D45_RS09005 (M0D45_08995) - 2123615..2125594 (-) 1980 WP_260817964.1 beta-N-acetylglucosaminidase domain-containing protein -
  M0D45_RS09010 (M0D45_09000) - 2126068..2126442 (-) 375 WP_008574841.1 P-II family nitrogen regulator -
  M0D45_RS09015 (M0D45_09005) - 2126596..2126874 (+) 279 WP_260815410.1 accessory factor UbiK family protein -
  M0D45_RS09020 (M0D45_09010) comM 2126890..2128410 (+) 1521 WP_260815409.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  M0D45_RS09025 (M0D45_09015) - 2128710..2129219 (+) 510 WP_260817965.1 lipocalin family protein -
  M0D45_RS09030 (M0D45_09020) - 2129381..2129557 (-) 177 WP_010374782.1 hypothetical protein -
  M0D45_RS09035 (M0D45_09025) - 2129940..2131502 (+) 1563 WP_260817966.1 EAL domain-containing protein -
  M0D45_RS09040 (M0D45_09030) - 2131567..2132688 (-) 1122 WP_252161771.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53938.66 Da        Isoelectric Point: 8.5235

>NTDB_id=679623 M0D45_RS09020 WP_260815409.1 2126890..2128410(+) (comM) [Xanthomonas prunicola strain MAI5069]
MSLALVHSRARVGVQAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGVDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LDVCATLNGSQKAPAAELAVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSSDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRGRVVAARQRQLTRGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDNSA
DIATRHLTEAIGYRKLDRALSAASAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=679623 M0D45_RS09020 WP_260815409.1 2126890..2128410(+) (comM) [Xanthomonas prunicola strain MAI5069]
ATGAGTCTGGCGCTGGTGCATAGCCGTGCCCGCGTGGGGGTGCAGGCGCCCGAGGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTTCCCTCTACCCAGATCGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCACGCGAGCGCGTACGTGCTGCCCTGC
TGTGCGCACAGTTCGAATTTCCCGCCCGGCGCATCACCATCAATCTGGCGCCGGCCGATTTACCGAAAGAAGGCGGCCGG
TTTGATTTACCGATCGCACTCGGCATCCTGGCTGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGATTACGAATTCCT
CGGCGAGCTTGCGCTCACCGGCGAGCTGCGCGGCGTCGATGGCGTGCTGCCCGCGGCGCTAGCGGCCGCGCAGGCAGGGC
GACGATTGATTGTGCCGCTGGCCAACGGCGCCGAAGCCGCGATTGCCGGGCACGTCGAAGCCTTCACCGCGCGCACGCTG
CTCGACGTCTGCGCCACGCTCAACGGCAGCCAGAAAGCGCCTGCCGCCGAGTTGGCGGTGCAGGCGCTCGGCGCCCGCGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGGTCGGCAGCCCTGGCTGCGGCAAGACCTTGCTGGCCTCGCGCTTGCCAGGCCTATTGCCCGAAGCCAGCGAA
GCCGAAGCACTGGAAACAGCGGCCATTACGTCCATCAGCGGCCGCGGGCTGGATCTGGCCCGCTGGCGGCAGCGGCCGTA
TCGGGCTCCGCACCACACTGCCAGCGCAGTCGCGCTGGTGGGCGGTGGCACGCATCCGCGCCCCGGCGAGATTTCGCTCG
CCCACAACGGCGTCTTGTTCTTGGACGAATTGCCCGAGTGGCAACGACAAACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCGGGTCTGGTCACGATCTCACGCGCGGCGCGCAGCGTGGATTTCCCGGCACGCTTCCAACTGGTCGCGGCCATGAACCC
GTGCCCGTGCGGCTGGGCGGGCGATGGCAGCGGACGCTGCCGCTGCAGCAGCGACAGCATCCGCCGCTACCGCAGCCGCA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCGCCGCAGGCACTGCGAAGCGGCAAC
CTTGGCGAGGACAGCGCCAGCGTGCGTGGCCGCGTGGTCGCCGCACGGCAGCGCCAGCTTACGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGGCATTGCCGTCTGCAACACGACGATCAAGTGCTGCTTGAGCGCGCCATCG
AACACCTGCAGCTGTCCGCCCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACAACAGCGCG
GACATCGCCACGCGCCATCTGACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCGGCCAGCGCGGCATA
G

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.719

100

0.567
  comM Haemophilus influenzae Rd KW20

55.773

100

0.563
  comM Glaesserella parasuis strain SC1401

54.438

100

0.545
  comM Vibrio campbellii strain DS40M4

54.15

100

0.542
  comM Legionella pneumophila str. Paris

51.71

98.221

0.508
  comM Legionella pneumophila strain ERS1305867

51.71

98.221

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.669

100

0.458