Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CPY98_RS00680 Genome accession   NZ_AP017469
Coordinates   139968..141494 (-) Length   508 a.a.
NCBI ID   WP_096385951.1    Uniprot ID   -
Organism   Hafnia sp. CBA7124     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 134968..146494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPY98_RS00670 hdfR 138647..139480 (-) 834 WP_096388697.1 HTH-type transcriptional regulator HdfR -
  CPY98_RS00675 - 139603..139941 (+) 339 WP_025802063.1 DUF413 domain-containing protein -
  CPY98_RS00680 comM 139968..141494 (-) 1527 WP_096385951.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CPY98_RS00690 - 141834..143063 (+) 1230 WP_046450419.1 MFS transporter -
  CPY98_RS00695 ilvL 143197..143295 (+) 99 WP_071778685.1 ilv operon leader peptide -
  CPY98_RS00700 ilvG 143436..145082 (+) 1647 WP_096385954.1 acetolactate synthase 2 catalytic subunit -
  CPY98_RS00705 ilvM 145079..145354 (+) 276 WP_080723891.1 acetolactate synthase 2 small subunit -
  CPY98_RS00710 - 145427..146359 (+) 933 WP_025802071.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54824.12 Da        Isoelectric Point: 7.6159

>NTDB_id=67957 CPY98_RS00680 WP_096385951.1 139968..141494(-) (comM) [Hafnia sp. CBA7124]
MSVAMINTRAAIGVQAPAVSVEAHISTGLPGFTLVGLPEATVKEAKDRVRSAIINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIAIAILIASEQLSATSVEGLELLGELGLSGALRRIQGAIPAAMAAQHHQRKLIAPEENEEELGLLGEQQPHLIANH
LLHVCDYLSGESPLLPPKVSQLSSQSPNTKDMRDIIGQEQARRALEIAATGGHNLLLLGPPGTGKTMLASRLNSILPPLT
TEEALESAAVASLVHQSTTGQSCYQRPFRTPHHSASMAALIGGGSLPRPGEISLAHNGVLFLDELPEFERRVLDALREPL
ESGEACISRALAKVTFPARVQLVAAMNPSPTGHYKGIHARTPPQQILKYLSRLSGPFLDRFDLSIEVPLLPAGVLSIQKR
VGESSEVIRQRVCLAREKQYQRSGKLNAHLAGKEMDSVCSLSQEDAAFLEQALEKMGLSVRAWHRILKVARSIADLAQSD
NISRIHIAEALSYRSMDRLIQHLHQALQ

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=67957 CPY98_RS00680 WP_096385951.1 139968..141494(-) (comM) [Hafnia sp. CBA7124]
ATGTCAGTGGCGATGATTAATACCCGTGCAGCAATCGGCGTGCAGGCACCCGCCGTGAGCGTTGAAGCACACATCAGTAC
CGGACTTCCCGGTTTTACATTAGTAGGTTTGCCTGAGGCGACCGTGAAAGAGGCTAAAGACCGCGTAAGAAGCGCCATCA
TAAATTGCGGTTTTACTTTCCCGGCAAAACGTATCACGGTGAATTTGGCTCCCGCAGATCTTCCCAAAGAGGGCGGTCGC
TACGATCTTCCCATTGCAATCGCCATTTTGATTGCTTCTGAGCAGCTTAGCGCGACTTCGGTGGAAGGATTAGAGTTACT
CGGTGAATTGGGCCTTTCAGGCGCACTACGGCGCATTCAGGGCGCTATACCAGCAGCTATGGCCGCACAGCATCATCAGC
GTAAATTAATCGCACCAGAGGAAAATGAGGAAGAGCTTGGCCTGCTTGGAGAACAACAGCCCCATCTCATTGCCAATCAT
CTTCTTCATGTTTGTGATTATCTCAGCGGTGAATCACCGCTTCTACCACCGAAGGTCTCTCAGCTATCCTCCCAATCTCC
CAACACAAAGGATATGCGGGATATTATTGGGCAAGAACAGGCACGAAGAGCTTTAGAAATCGCCGCCACAGGCGGCCACA
ACTTATTGTTATTGGGGCCACCCGGCACAGGGAAAACTATGTTAGCCAGCCGCCTTAATAGCATATTGCCACCGTTAACC
ACCGAAGAGGCTTTAGAGAGTGCGGCTGTCGCTAGTTTGGTACATCAATCAACCACGGGGCAATCTTGTTACCAGCGGCC
ATTTAGAACCCCACATCACAGTGCTTCAATGGCAGCACTCATTGGAGGTGGGTCTTTGCCAAGACCCGGAGAGATTTCTC
TGGCACATAACGGGGTATTATTTTTGGATGAACTGCCCGAGTTTGAACGGCGAGTGTTGGATGCTCTGCGCGAACCGCTT
GAGTCTGGCGAAGCATGCATTTCTAGGGCACTGGCAAAAGTCACTTTCCCTGCAAGAGTACAATTAGTTGCTGCTATGAA
TCCAAGTCCGACAGGACATTACAAAGGCATTCATGCTCGTACACCACCACAGCAGATACTCAAATATCTATCCCGCTTAT
CAGGCCCATTTTTAGATCGTTTTGACCTCTCTATTGAAGTGCCATTGTTACCCGCAGGCGTTCTTAGCATTCAAAAACGC
GTTGGAGAAAGCAGCGAGGTTATTCGCCAACGAGTCTGTTTAGCACGAGAAAAACAGTATCAGCGATCGGGAAAGCTCAA
CGCACACTTGGCAGGCAAAGAGATGGATAGCGTATGCTCACTATCTCAAGAAGATGCGGCATTTCTGGAACAAGCGCTAG
AGAAGATGGGATTATCGGTTAGGGCTTGGCATCGAATACTAAAAGTTGCTCGTTCTATTGCAGATCTCGCACAAAGTGAC
AACATCAGCCGAATTCATATTGCAGAGGCACTCAGCTATCGCTCAATGGATCGTTTAATCCAACATCTCCATCAGGCACT
GCAATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.904

100

0.61
  comM Glaesserella parasuis strain SC1401

60.784

100

0.61
  comM Vibrio cholerae strain A1552

60.835

99.016

0.602
  comM Vibrio campbellii strain DS40M4

60.277

99.606

0.6
  comM Legionella pneumophila str. Paris

48.134

100

0.482
  comM Legionella pneumophila strain ERS1305867

48.134

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.68

97.835

0.457

Multiple sequence alignment