Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MZN67_RS03020 Genome accession   NZ_CP096116
Coordinates   642120..643631 (-) Length   503 a.a.
NCBI ID   WP_040147911.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila strain DFS-2111020037     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 637120..648631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN67_RS02990 (MZN67_02955) - 637670..638341 (-) 672 WP_038837579.1 TIGR00153 family protein -
  MZN67_RS02995 (MZN67_02960) - 638529..639293 (+) 765 WP_011214806.1 hypothetical protein -
  MZN67_RS03000 (MZN67_02965) - 639597..640160 (+) 564 WP_010946323.1 YqgE/AlgH family protein -
  MZN67_RS03005 (MZN67_02970) ruvX 640153..640572 (+) 420 WP_027266093.1 Holliday junction resolvase RuvX -
  MZN67_RS03010 (MZN67_02975) - 640622..641515 (+) 894 WP_161504157.1 aspartate carbamoyltransferase catalytic subunit -
  MZN67_RS03015 (MZN67_02980) - 641629..642015 (-) 387 WP_038837583.1 hypothetical protein -
  MZN67_RS03020 (MZN67_02985) comM 642120..643631 (-) 1512 WP_040147911.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MZN67_RS03025 (MZN67_02990) - 643703..643957 (-) 255 WP_011214812.1 accessory factor UbiK family protein -
  MZN67_RS03030 (MZN67_02995) - 644102..644440 (+) 339 WP_011213200.1 P-II family nitrogen regulator -
  MZN67_RS03035 (MZN67_03000) - 644450..645031 (-) 582 WP_038837586.1 5-formyltetrahydrofolate cyclo-ligase -
  MZN67_RS03040 (MZN67_03005) - 645278..645463 (+) 186 WP_010946331.1 PA3496 family putative envelope integrity protein -
  MZN67_RS03045 (MZN67_03010) - 645477..646292 (+) 816 WP_010946332.1 aminotransferase class IV -
  MZN67_RS03050 (MZN67_03015) - 646319..647002 (-) 684 WP_050566908.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 54983.60 Da        Isoelectric Point: 8.0837

>NTDB_id=679443 MZN67_RS03020 WP_040147911.1 642120..643631(-) (comM) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
MSLAFTKTRSTIGIVAQPVSVEVHLSNGLPSFTMVGLAETAVKESKDRVRSAIINSQFEFPCRKITVNLGPANLPKTGSG
FDLPIALGILAASEQIPLTNLANHEFIGELALSGELRGVSAIIPAVLAAHKDNQHLIIANANAAEASLTGHPKVFTANNL
REVCDYLCQGTSLQNLPPKPDLLFNNHELDWSDIKGQHHAKNAMVIAACGGHSILLSGAPGSGKTMMAKRFSTLLPELSE
TQALECAAINSIRGKLPDFREWRLPPFRAPHHTASPVALVGGGNPPKPGEISLAHHGVLFLDELPEFNRQVLETLREPLE
SGHICISRAAAQIEFPAKFQLIAAMNPCPCGQWGNSQANCLCTPDRISRYLAKLSAPLLDRIDMQVTIHALSQEELIKPN
TRLEKQSPAIREKVTKMHEIQMARQDSLNANLNSKTCEMVCELGSEEQLFLREVMSKLKLSARGYHRLLKVSRTIADMSE
CNKVMLNHLQQALSYKQILHLPK

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=679443 MZN67_RS03020 WP_040147911.1 642120..643631(-) (comM) [Legionella pneumophila subsp. pneumophila strain DFS-2111020037]
ATGAGTCTCGCATTTACCAAAACGCGAAGTACTATTGGTATTGTCGCACAACCAGTATCTGTGGAAGTCCATTTATCAAA
TGGATTGCCAAGTTTTACTATGGTAGGACTTGCTGAAACAGCAGTGAAAGAAAGTAAAGACCGCGTGCGCAGTGCCATTA
TAAATAGCCAATTCGAATTTCCATGCCGTAAAATTACCGTTAATCTTGGCCCTGCCAATTTACCTAAAACAGGAAGTGGC
TTTGACTTGCCTATTGCACTAGGGATACTCGCAGCATCGGAACAAATTCCTCTCACCAACCTGGCAAACCACGAATTTAT
TGGAGAATTGGCTTTAAGCGGCGAGCTTAGAGGGGTTTCTGCCATTATACCTGCTGTTCTTGCTGCTCATAAAGACAATC
AACATCTGATTATAGCGAATGCCAATGCTGCCGAAGCTTCTTTAACCGGCCATCCAAAAGTCTTTACTGCCAATAACTTA
CGCGAAGTTTGTGATTATCTATGCCAGGGTACTTCTTTACAGAACTTACCTCCCAAACCAGATCTTTTATTTAATAACCA
TGAATTGGATTGGTCTGATATTAAGGGGCAACATCATGCCAAAAATGCTATGGTCATTGCTGCCTGTGGGGGACACAGCA
TTCTGCTAAGTGGCGCGCCGGGCAGTGGAAAAACGATGATGGCAAAAAGATTTAGTACCTTGCTGCCCGAGCTATCCGAA
ACACAAGCTCTCGAATGCGCAGCCATTAATTCAATTCGAGGCAAATTACCTGATTTCAGGGAATGGCGTTTGCCTCCTTT
TCGTGCACCACATCATACTGCCTCACCTGTCGCGCTAGTCGGAGGAGGCAACCCACCGAAACCCGGTGAAATTTCATTAG
CCCATCACGGCGTATTATTTTTAGATGAATTACCTGAATTTAATCGGCAAGTATTAGAGACGCTTAGAGAACCTTTAGAG
TCAGGGCATATTTGCATTTCCAGAGCAGCTGCACAAATAGAGTTTCCTGCCAAATTTCAATTAATTGCAGCAATGAATCC
TTGCCCTTGTGGCCAATGGGGTAATTCACAAGCCAATTGCTTATGTACTCCTGATAGAATCAGCCGCTATTTGGCAAAAC
TTTCTGCTCCATTATTAGATAGAATCGATATGCAGGTTACAATTCACGCATTATCTCAAGAGGAGTTAATTAAACCCAAT
ACCCGTTTAGAAAAGCAAAGTCCTGCTATTAGAGAAAAGGTAACAAAGATGCATGAAATACAAATGGCACGACAAGATAG
TCTCAATGCCAATTTAAATTCCAAAACATGCGAAATGGTTTGCGAATTGGGATCAGAAGAACAATTGTTTCTCCGAGAAG
TGATGAGTAAACTGAAACTGTCTGCTCGTGGTTACCATCGCTTACTAAAAGTAAGCAGGACAATTGCTGATATGAGTGAA
TGTAATAAGGTCATGCTAAACCATCTGCAACAGGCGTTATCCTATAAACAAATCTTGCATTTGCCTAAATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Legionella pneumophila str. Paris

97.217

100

0.972
  comM Legionella pneumophila strain ERS1305867

97.217

100

0.972
  comM Haemophilus influenzae Rd KW20

50.394

100

0.509
  comM Vibrio cholerae strain A1552

50.497

100

0.505
  comM Vibrio campbellii strain DS40M4

49.901

100

0.501
  comM Glaesserella parasuis strain SC1401

47.441

100

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.369

99.006

0.419