Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   M0D62_RS07610 Genome accession   NZ_CP096114
Coordinates   1597243..1597740 (-) Length   165 a.a.
NCBI ID   WP_248129771.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592243..1602740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS07585 (M0D62_07575) gcvPB 1592406..1593878 (-) 1473 WP_047434576.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  M0D62_RS07590 (M0D62_07580) gcvPA 1593871..1595217 (-) 1347 WP_000019677.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  M0D62_RS07595 (M0D62_07585) gcvT 1595236..1596327 (-) 1092 WP_047434572.1 glycine cleavage system aminomethyltransferase GcvT -
  M0D62_RS07600 (M0D62_07590) - 1596484..1597008 (-) 525 WP_047430877.1 shikimate kinase -
  M0D62_RS07605 (M0D62_07595) - 1596995..1597144 (-) 150 WP_072324192.1 hypothetical protein -
  M0D62_RS07610 (M0D62_07600) comGF 1597243..1597740 (-) 498 WP_248129771.1 competence type IV pilus minor pilin ComGF Machinery gene
  M0D62_RS07615 (M0D62_07605) comGE 1597658..1597957 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  M0D62_RS07620 (M0D62_07610) comGD 1597944..1598390 (-) 447 WP_080724744.1 competence type IV pilus minor pilin ComGD Machinery gene
  M0D62_RS07625 (M0D62_07615) comGC 1598368..1598679 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  M0D62_RS07630 (M0D62_07620) comGB 1598694..1599764 (-) 1071 WP_047434565.1 competence type IV pilus assembly protein ComGB Machinery gene
  M0D62_RS07635 (M0D62_07625) comGA 1599736..1600710 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  M0D62_RS07640 (M0D62_07630) - 1600762..1601385 (-) 624 WP_047434561.1 MBL fold metallo-hydrolase -
  M0D62_RS07645 (M0D62_07635) - 1601382..1601711 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  M0D62_RS07650 (M0D62_07640) - 1601711..1602697 (-) 987 WP_000161316.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19249.05 Da        Isoelectric Point: 10.4305

>NTDB_id=679412 M0D62_RS07610 WP_248129771.1 1597243..1597740(-) (comGF) [Staphylococcus argenteus strain MRSA-139-14-168]
MLLSWMISKFVQLQMKILQNLKNVFNIKVRAFSLIEMILAMMAISIILLIVPDTIKISKTFLNESKDLTSVDFEFFARDL
IDDFKKIDKKQIEIKPHNILINKTNEQIEYKFLNNKIIKTVNDKGNITMLNNVLSFSINKDQNATLRISITLKEGELIRK
KIIFV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=679412 M0D62_RS07610 WP_248129771.1 1597243..1597740(-) (comGF) [Staphylococcus argenteus strain MRSA-139-14-168]
ATGTTATTAAGTTGGATGATAAGCAAATTTGTGCAATTACAAATGAAAATTCTTCAAAATTTAAAGAATGTATTCAATAT
TAAAGTAAGGGCTTTTTCGTTAATTGAAATGATATTAGCAATGATGGCTATAAGTATTATTTTGCTAATTGTACCTGACA
CGATAAAAATAAGTAAGACGTTTTTAAATGAGAGCAAAGATTTAACGAGTGTTGATTTTGAATTCTTTGCAAGAGACTTA
ATTGATGATTTTAAAAAAATAGATAAAAAACAAATTGAAATCAAACCTCATAATATCCTTATCAATAAAACAAACGAGCA
AATTGAGTATAAATTTTTGAATAATAAAATTATCAAAACAGTTAATGATAAGGGGAATATAACGATGTTAAATAATGTTC
TGTCTTTTTCAATTAATAAAGATCAAAATGCTACTTTGCGAATATCAATAACATTAAAAGAAGGTGAATTAATACGCAAG
AAAATAATATTTGTTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(62-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus MW2

55.758

100

0.558
  comGF Staphylococcus aureus N315

55.152

100

0.552