Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   M0D62_RS07635 Genome accession   NZ_CP096114
Coordinates   1599736..1600710 (-) Length   324 a.a.
NCBI ID   WP_031787262.1    Uniprot ID   A0A7U7JUV7
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1594736..1605710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS07595 (M0D62_07585) gcvT 1595236..1596327 (-) 1092 WP_047434572.1 glycine cleavage system aminomethyltransferase GcvT -
  M0D62_RS07600 (M0D62_07590) - 1596484..1597008 (-) 525 WP_047430877.1 shikimate kinase -
  M0D62_RS07605 (M0D62_07595) - 1596995..1597144 (-) 150 WP_072324192.1 hypothetical protein -
  M0D62_RS07610 (M0D62_07600) comGF 1597243..1597740 (-) 498 WP_248129771.1 competence type IV pilus minor pilin ComGF Machinery gene
  M0D62_RS07615 (M0D62_07605) comGE 1597658..1597957 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  M0D62_RS07620 (M0D62_07610) comGD 1597944..1598390 (-) 447 WP_080724744.1 competence type IV pilus minor pilin ComGD Machinery gene
  M0D62_RS07625 (M0D62_07615) comGC 1598368..1598679 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  M0D62_RS07630 (M0D62_07620) comGB 1598694..1599764 (-) 1071 WP_047434565.1 competence type IV pilus assembly protein ComGB Machinery gene
  M0D62_RS07635 (M0D62_07625) comGA 1599736..1600710 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  M0D62_RS07640 (M0D62_07630) - 1600762..1601385 (-) 624 WP_047434561.1 MBL fold metallo-hydrolase -
  M0D62_RS07645 (M0D62_07635) - 1601382..1601711 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  M0D62_RS07650 (M0D62_07640) - 1601711..1602697 (-) 987 WP_000161316.1 ROK family glucokinase -
  M0D62_RS07655 (M0D62_07645) - 1602697..1602897 (-) 201 WP_000087563.1 YqgQ family protein -
  M0D62_RS07660 (M0D62_07650) - 1602878..1604341 (-) 1464 WP_047434558.1 rhomboid family intramembrane serine protease -
  M0D62_RS07665 (M0D62_07655) - 1604353..1604892 (-) 540 WP_072292060.1 5-formyltetrahydrofolate cyclo-ligase -
  M0D62_RS07670 (M0D62_07660) rpmG 1605104..1605253 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36867.03 Da        Isoelectric Point: 9.0234

>NTDB_id=679417 M0D62_RS07635 WP_031787262.1 1599736..1600710(-) (comGA) [Staphylococcus argenteus strain MRSA-139-14-168]
MKILFQEIINKAIVMKASDVHFIPVHNEVSIKFRINDNLEQYEEIGNSIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQYFKQTKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNEKAGINYVNSFKAILRCDPDVILIGEIRDKEVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGISVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLQYFFSHNHSLPTSFKKLETKLDDMTKAGVICESTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=679417 M0D62_RS07635 WP_031787262.1 1599736..1600710(-) (comGA) [Staphylococcus argenteus strain MRSA-139-14-168]
ATGAAGATTTTATTTCAAGAGATAATTAACAAAGCGATAGTAATGAAAGCGAGTGATGTCCATTTTATTCCTGTTCATAA
TGAAGTGAGTATTAAATTTCGTATAAATGACAATTTGGAACAGTATGAAGAAATTGGAAATAGTATTTATCAAAAGCTAT
TAGTTTATATGAAATTTCAAGCTGGTCTCGATGTATCTACGCAACAAGTTGCTCAGAGTGGTCGTTATAGCTACCATTTT
AATAAAATTTATTTTTTAAGAATTTCAACATTGCCATTATCACTTGGTCAAGAAAGTTGTGTGATAAGAATAGTTCCTCA
ATATTTTAAACAAACTAAATCAACATATAAATTTAATGATTTTAAACATTTAATGAATAAGAAACAAGGCTTATTGTTAT
TTAGTGGTCCGACGGGTTCAGGTAAAAGTACTTTAATGTATCAAATGGTCTCATACGCTAACAAAGCATTAAACTTAAAT
GTTATATCTATTGAAGACCCAGTAGAAATGCAAATTCCTGGAATAGTTCAAATAAACGTAAATGAAAAAGCTGGGATTAA
CTATGTCAATTCATTTAAAGCGATATTAAGGTGTGACCCAGATGTTATTCTTATAGGGGAAATTAGAGATAAAGAAGTAG
CTAAATGTGTCATCCAAGCAAGTTTAAGTGGTCATCTAGTACTCACTACCTTACATGCAACAGATTGTAAAGGTGCAATT
TTAAGATTACTAGAAATGGGGATTTCAGTACAAGAACTAATACAAGCAACTAATTTAATTATAAATCAAAGACTTGTTAC
TACAATTAAACAGCAACGACAATTAGTGTGTGAAATTTTATCACAACAACAACTTCAGTATTTCTTCTCGCATAATCATT
CATTACCTACCTCATTTAAAAAACTAGAAACAAAGCTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAAGTACAATG
GATAAGTATATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7JUV7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

95.988

100

0.96
  comGA Staphylococcus aureus N315

95.988

100

0.96