Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   M0D62_RS07615 Genome accession   NZ_CP096114
Coordinates   1597658..1597957 (-) Length   99 a.a.
NCBI ID   WP_000800819.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1592658..1602957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS07590 (M0D62_07580) gcvPA 1593871..1595217 (-) 1347 WP_000019677.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  M0D62_RS07595 (M0D62_07585) gcvT 1595236..1596327 (-) 1092 WP_047434572.1 glycine cleavage system aminomethyltransferase GcvT -
  M0D62_RS07600 (M0D62_07590) - 1596484..1597008 (-) 525 WP_047430877.1 shikimate kinase -
  M0D62_RS07605 (M0D62_07595) - 1596995..1597144 (-) 150 WP_072324192.1 hypothetical protein -
  M0D62_RS07610 (M0D62_07600) comGF 1597243..1597740 (-) 498 WP_248129771.1 competence type IV pilus minor pilin ComGF Machinery gene
  M0D62_RS07615 (M0D62_07605) comGE 1597658..1597957 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  M0D62_RS07620 (M0D62_07610) comGD 1597944..1598390 (-) 447 WP_080724744.1 competence type IV pilus minor pilin ComGD Machinery gene
  M0D62_RS07625 (M0D62_07615) comGC 1598368..1598679 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  M0D62_RS07630 (M0D62_07620) comGB 1598694..1599764 (-) 1071 WP_047434565.1 competence type IV pilus assembly protein ComGB Machinery gene
  M0D62_RS07635 (M0D62_07625) comGA 1599736..1600710 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  M0D62_RS07640 (M0D62_07630) - 1600762..1601385 (-) 624 WP_047434561.1 MBL fold metallo-hydrolase -
  M0D62_RS07645 (M0D62_07635) - 1601382..1601711 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  M0D62_RS07650 (M0D62_07640) - 1601711..1602697 (-) 987 WP_000161316.1 ROK family glucokinase -
  M0D62_RS07655 (M0D62_07645) - 1602697..1602897 (-) 201 WP_000087563.1 YqgQ family protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11194.39 Da        Isoelectric Point: 9.4577

>NTDB_id=679413 M0D62_RS07615 WP_000800819.1 1597658..1597957(-) (comGE) [Staphylococcus argenteus strain MRSA-139-14-168]
MKNYKLKASFFLDSMAAVMLVGLICLVLIPMMNQMRMNFYIEVKSIDAAKTILTAASTNSKNELKKGVKIGEYVIKLDDK
QICAITNENSSKFKECIQY

Nucleotide


Download         Length: 300 bp        

>NTDB_id=679413 M0D62_RS07615 WP_000800819.1 1597658..1597957(-) (comGE) [Staphylococcus argenteus strain MRSA-139-14-168]
ATGAAAAATTATAAGCTCAAAGCATCATTCTTTTTAGATAGCATGGCAGCAGTTATGTTAGTAGGATTAATCTGTTTAGT
TTTAATACCAATGATGAATCAAATGCGTATGAATTTCTATATTGAAGTAAAAAGTATAGATGCAGCAAAGACTATTCTAA
CTGCGGCTTCCACAAATAGTAAAAATGAGCTAAAAAAAGGAGTTAAAATTGGAGAATATGTTATTAAGTTGGATGATAAG
CAAATTTGTGCAATTACAAATGAAAATTCTTCAAAATTTAAAGAATGTATTCAATATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Staphylococcus aureus N315

57.576

100

0.576
  comGE Staphylococcus aureus MW2

49.123

100

0.566