Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   M0D62_RS07630 Genome accession   NZ_CP096114
Coordinates   1598694..1599764 (-) Length   356 a.a.
NCBI ID   WP_047434565.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1593694..1604764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS07590 (M0D62_07580) gcvPA 1593871..1595217 (-) 1347 WP_000019677.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  M0D62_RS07595 (M0D62_07585) gcvT 1595236..1596327 (-) 1092 WP_047434572.1 glycine cleavage system aminomethyltransferase GcvT -
  M0D62_RS07600 (M0D62_07590) - 1596484..1597008 (-) 525 WP_047430877.1 shikimate kinase -
  M0D62_RS07605 (M0D62_07595) - 1596995..1597144 (-) 150 WP_072324192.1 hypothetical protein -
  M0D62_RS07610 (M0D62_07600) comGF 1597243..1597740 (-) 498 WP_248129771.1 competence type IV pilus minor pilin ComGF Machinery gene
  M0D62_RS07615 (M0D62_07605) comGE 1597658..1597957 (-) 300 WP_000800819.1 hypothetical protein Machinery gene
  M0D62_RS07620 (M0D62_07610) comGD 1597944..1598390 (-) 447 WP_080724744.1 competence type IV pilus minor pilin ComGD Machinery gene
  M0D62_RS07625 (M0D62_07615) comGC 1598368..1598679 (-) 312 WP_000921699.1 competence type IV pilus major pilin ComGC Machinery gene
  M0D62_RS07630 (M0D62_07620) comGB 1598694..1599764 (-) 1071 WP_047434565.1 competence type IV pilus assembly protein ComGB Machinery gene
  M0D62_RS07635 (M0D62_07625) comGA 1599736..1600710 (-) 975 WP_031787262.1 competence type IV pilus ATPase ComGA Machinery gene
  M0D62_RS07640 (M0D62_07630) - 1600762..1601385 (-) 624 WP_047434561.1 MBL fold metallo-hydrolase -
  M0D62_RS07645 (M0D62_07635) - 1601382..1601711 (-) 330 WP_001018874.1 MTH1187 family thiamine-binding protein -
  M0D62_RS07650 (M0D62_07640) - 1601711..1602697 (-) 987 WP_000161316.1 ROK family glucokinase -
  M0D62_RS07655 (M0D62_07645) - 1602697..1602897 (-) 201 WP_000087563.1 YqgQ family protein -
  M0D62_RS07660 (M0D62_07650) - 1602878..1604341 (-) 1464 WP_047434558.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41717.11 Da        Isoelectric Point: 10.1752

>NTDB_id=679416 M0D62_RS07630 WP_047434565.1 1598694..1599764(-) (comGB) [Staphylococcus argenteus strain MRSA-139-14-168]
MKVQWISIFKKYSKKRQLNKAQQIELIVNLKNLLQYGFTLYQSFQFLNLQIKYKDKELSSKILSEISNGASCSKILAMLG
YSDTIVMQIYLAERFGNIVDILDETVKFMKINRKSEQRLLKTLQYPLVLVSVFIGMIMMLNITVIPQFQQLYTSMNIKLS
TFQKALSFFISSLPSLILITIFLILILTTSIKLIYNRLTMLYKINFMMKIPILSSYYKLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGEYLLTYSEKGYGLPEILSNLKCFKPQLIKFIQQGEKRGKLEVELRLYSQILVKQIEDKAIR
QTQFIQPILFLILGLFIVAIYLVIMLPMFQMMQSIN

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=679416 M0D62_RS07630 WP_047434565.1 1598694..1599764(-) (comGB) [Staphylococcus argenteus strain MRSA-139-14-168]
GTGAAAGTACAATGGATAAGTATATTTAAAAAATATTCTAAGAAACGACAATTAAACAAAGCACAACAAATAGAGTTAAT
TGTAAATTTAAAGAATTTACTACAATATGGGTTCACATTATATCAAAGCTTTCAGTTTCTAAACCTTCAAATTAAATATA
AAGATAAAGAACTATCGTCAAAAATTCTTAGCGAAATTTCAAATGGTGCATCGTGTAGCAAAATACTAGCCATGTTAGGC
TATAGTGATACTATAGTAATGCAAATTTACTTAGCAGAAAGGTTTGGTAATATTGTAGATATCTTAGATGAAACAGTGAA
ATTTATGAAAATAAATAGAAAATCCGAGCAAAGATTATTAAAAACTTTGCAATATCCCTTAGTGTTAGTTTCAGTATTTA
TAGGAATGATTATGATGTTGAATATCACTGTTATTCCACAATTCCAACAACTATATACTTCAATGAATATTAAATTATCA
ACATTTCAAAAAGCACTTTCCTTTTTTATCTCAAGTTTACCCTCATTAATTTTAATAACAATTTTTCTTATTTTAATTTT
AACCACCTCAATAAAATTAATTTATAACAGGCTAACGATGTTATATAAAATCAACTTTATGATGAAGATACCAATTTTAT
CCAGTTATTATAAGTTGTTCAAAACATATTTTGTTACAAATGAATTAGTTTTATTCTATAAAAATGGTATTACACTTCAA
TCTATCGTTGATGTTTATATCAATCATAGTAGTGATCCATTCAGACAATTTTTAGGTGAATATTTATTAACATATTCAGA
AAAAGGATATGGGTTACCGGAAATTTTATCAAATTTAAAGTGCTTTAAACCACAATTGATAAAGTTTATACAGCAAGGTG
AAAAAAGAGGGAAATTAGAAGTTGAGCTTAGATTATACTCTCAAATTTTAGTGAAACAAATTGAAGATAAAGCGATTCGT
CAAACTCAATTTATACAACCAATTTTATTTTTAATCTTAGGGCTTTTTATTGTTGCAATTTATTTAGTAATAATGCTACC
AATGTTCCAAATGATGCAAAGTATTAATTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(32-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

78.592

99.719

0.784
  comGB Staphylococcus aureus N315

78.592

99.719

0.784