Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M0D62_RS06120 Genome accession   NZ_CP096114
Coordinates   1255914..1256786 (+) Length   290 a.a.
NCBI ID   WP_047434998.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain MRSA-139-14-168     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1250914..1261786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D62_RS06100 (M0D62_06090) ylqF 1251679..1252563 (+) 885 WP_047435004.1 ribosome biogenesis GTPase YlqF -
  M0D62_RS06105 (M0D62_06095) - 1252547..1253314 (+) 768 WP_047435001.1 ribonuclease HII -
  M0D62_RS06110 (M0D62_06100) sucC 1253423..1254589 (+) 1167 WP_001020805.1 ADP-forming succinate--CoA ligase subunit beta -
  M0D62_RS06115 (M0D62_06105) sucD 1254611..1255519 (+) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  M0D62_RS06120 (M0D62_06110) dprA 1255914..1256786 (+) 873 WP_047434998.1 DNA-processing protein DprA Machinery gene
  M0D62_RS06125 (M0D62_06115) topA 1256960..1259035 (+) 2076 WP_072292005.1 type I DNA topoisomerase -
  M0D62_RS06130 (M0D62_06120) trmFO 1259190..1260497 (+) 1308 WP_000195261.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33203.09 Da        Isoelectric Point: 9.3914

>NTDB_id=679407 M0D62_RS06120 WP_047434998.1 1255914..1256786(+) (dprA) [Staphylococcus argenteus strain MRSA-139-14-168]
MLNQILLKLIWSHFTTSQIHQLFNKFPNFLEVDELEQNYLLRKFVLNNSNENHSIKNELYSRISFDEIMSNIQQSKLNFI
TCFDKGYPSYLKEIYDYPFVLFYKGSINILSSPKALAVVGSRVSSNYTTKALNHLFYSFQQSNLTIVSGLAQGADAMAHQ
TALKYNLPTIAVLGFGHQTHYPKSTRALRHKIEEKGLVISEYPPHTPIARYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNVNDILEDYFI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=679407 M0D62_RS06120 WP_047434998.1 1255914..1256786(+) (dprA) [Staphylococcus argenteus strain MRSA-139-14-168]
ATGTTAAATCAAATTCTACTTAAATTAATTTGGAGTCATTTTACAACTTCGCAAATTCACCAGCTATTTAATAAATTTCC
AAACTTTTTAGAAGTAGATGAACTTGAACAAAATTATCTACTACGCAAATTTGTTTTAAATAATTCAAATGAGAATCATT
CGATTAAAAATGAGCTTTATAGTCGAATTTCTTTTGATGAAATAATGTCAAATATCCAACAAAGCAAATTGAACTTTATA
ACTTGTTTTGATAAAGGGTATCCTAGTTACTTAAAAGAAATTTACGACTATCCATTTGTTTTATTTTATAAAGGGAGTAT
TAATATCCTCAGTTCTCCTAAAGCATTAGCTGTAGTTGGTTCGAGAGTTTCAAGCAATTATACAACAAAAGCATTGAACC
ATCTTTTCTATTCGTTCCAACAATCAAATTTAACAATCGTTTCTGGGCTTGCACAAGGTGCAGATGCAATGGCACATCAA
ACAGCATTAAAATACAATCTCCCTACAATAGCAGTTTTAGGCTTTGGCCATCAAACACATTATCCCAAAAGTACACGAGC
ATTAAGACATAAAATAGAAGAAAAAGGTTTAGTGATATCCGAATATCCACCGCATACACCAATTGCTAGATATAGATTTC
CAGAACGAAATAGAATTATCAGTGGGTTGTCAAAAGGGGTTCTAATAACAGAAGCTAAAGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAACAGAAATGTTTATGTTTTACCAGGATCAATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGAGCTAAGGTAGTTTTAAACGTTAATGATATATTAGAAGATTACTTTATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

66.096

100

0.666
  dprA Staphylococcus aureus N315

66.096

100

0.666
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

38.078

96.897

0.369
  dprA/cilB/dalA Streptococcus pneumoniae D39

38.078

96.897

0.369
  dprA/cilB/dalA Streptococcus pneumoniae R6

38.078

96.897

0.369
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

38.078

96.897

0.369
  dprA/cilB/dalA Streptococcus mitis SK321

38.078

96.897

0.369
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

37.722

96.897

0.366