Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LAB08_RS29405 Genome accession   NZ_AP017423
Coordinates   6545728..6547221 (+) Length   497 a.a.
NCBI ID   WP_096514249.1    Uniprot ID   -
Organism   Pseudomonas izuensis strain LAB-08     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6540728..6552221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAB08_RS29370 (LAB08_R58740) - 6540917..6541342 (-) 426 WP_096514255.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LAB08_RS29375 (LAB08_R58750) - 6541558..6542895 (-) 1338 WP_096514254.1 ammonium transporter -
  LAB08_RS29380 (LAB08_R58760) glnK 6542931..6543269 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  LAB08_RS29385 (LAB08_R58770) - 6543689..6543949 (+) 261 WP_096514253.1 accessory factor UbiK family protein -
  LAB08_RS29390 (LAB08_R58780) - 6544392..6544907 (+) 516 WP_096514252.1 Bro-N domain-containing protein -
  LAB08_RS29395 (LAB08_R58790) - 6544919..6545182 (-) 264 WP_096514251.1 HigA family addiction module antitoxin -
  LAB08_RS29400 (LAB08_R58800) - 6545378..6545575 (+) 198 WP_096514250.1 hypothetical protein -
  LAB08_RS29405 (LAB08_R58810) comM 6545728..6547221 (+) 1494 WP_096514249.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LAB08_RS29410 (LAB08_R58820) - 6547415..6548335 (-) 921 WP_096514248.1 LysR substrate-binding domain-containing protein -
  LAB08_RS29415 (LAB08_R58830) - 6548494..6549888 (+) 1395 WP_096515622.1 NorM family multidrug efflux MATE transporter -
  LAB08_RS29420 (LAB08_R58840) - 6549995..6551668 (-) 1674 WP_096514247.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53225.26 Da        Isoelectric Point: 7.8852

>NTDB_id=67934 LAB08_RS29405 WP_096514249.1 6545728..6547221(+) (comM) [Pseudomonas izuensis strain LAB-08]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRWLMVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPIEPYVSNGLLYASKPYPDLNEVQGQLSAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVTSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAHKP
GDDTASAAAQVAEARERQHKRQGCANAFLDLPGLRRHCNLSTVDETWLETACERLTLSLRSAHRLLKVARTLADLEQVDA
INREHLAEALQYRPATQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=67934 LAB08_RS29405 WP_096514249.1 6545728..6547221(+) (comM) [Pseudomonas izuensis strain LAB-08]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATCGGCGTGGATGCCCCCGCTGTCACCGTCGAAGTCCACCTGGCCAA
TGGTTTGCCGTCGCTGACCATGGTCGGCCTGCCTGAGGCGGCGGTTAAGGAAAGCAAGGATCGGGTGCGCAGTGCGATCA
TCAATTCGGGGCTGCAATTTCCGGCGCGGCGGATCACGTTGAATCTGGCGCCGGCGGATTTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCCCTGGGCATTCTCTCGGCCAGTGTGCAGGTGCCGACATTGACGCTCGATGATGTGGAGTGTCT
TGGGGAGTTGGCGTTATCGGGCGCGGTGCGAGCGGTTCGAGGGGTGTTGCCGGCGGCGCTGGCGGCGCGCAAGGCCGGGC
GCTGGTTGATGGTGCCACGAGCGAACGCCGAGGAAGCGTGCCTGGCGTCGGGGTTGAAGGTGATTGCGGTGGATCATTTG
CTTGAGGCCGTCGCGCATTTCAATGGGCATACACCGATCGAGCCTTATGTTTCCAATGGCTTGCTGTACGCCAGCAAACC
TTATCCCGACTTGAATGAGGTACAGGGTCAACTCTCGGCCAAGCGTGCCTTGCTGATTGCTGCCGCAGGCGCTCACAACC
TGCTGTTTAGCGGGCCACCCGGAACGGGGAAAACGCTGTTGGCCAGCCGCCTGCCGGGATTGCTGCCGCCGCTGGCCGAA
AATGAAGCACTGGAAGTGGCGGCGATTCAATCGGTCACCAGTTGCGTGCCGCTGAGCCATTGGCCGCAGCGGCCGTTTCG
CCAGCCGCATCACTCGGCATCCGGGCCCGCGCTGGTGGGTGGAGGCTCCAAACCCCAGCCTGGCGAAATTACTCTCGCCC
ACCACGGTGTGCTGTTTCTGGACGAACTCCCGGAATTTGATCGCAAGGTATTGGAGGTGCTGCGCGAGCCGCTGGAGTCC
GGGCATATTGTGATCTCACGGGCCAAGGATCGCGTGCGATTTCCGGCGCGCTTTCAATTGGTCGCGGCCATGAACCCCTG
CCCCTGTGGATATCTTGGCGAGCCCAGCGGTAAATGTTCGTGCACGCCGGACATGGTGCAACGCTATCGCAACAAGCTCT
CGGGGCCGCTGCTGGATCGGATCGATCTGCACCTGACCGTGGCCCGGGAAGCCACGGCGCTGAATCCGGCGCATAAACCT
GGGGATGACACGGCATCGGCTGCGGCGCAGGTTGCCGAGGCCCGCGAGCGACAGCACAAGCGCCAGGGATGCGCGAATGC
ATTTCTCGATCTGCCAGGGCTGCGCCGTCACTGCAACTTATCCACAGTCGATGAAACCTGGCTGGAAACAGCGTGTGAAC
GACTGACGTTGTCGCTCAGATCAGCCCATAGATTGCTCAAGGTGGCGCGGACACTGGCGGATCTGGAACAGGTTGATGCG
ATCAACCGTGAGCATCTGGCCGAAGCGTTGCAGTATCGGCCGGCGACGCAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.747

99.598

0.545
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Haemophilus influenzae Rd KW20

52.906

100

0.531
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.908

100

0.463

Multiple sequence alignment