Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MY525_RS13450 Genome accession   NZ_CP096018
Coordinates   2948327..2949835 (+) Length   502 a.a.
NCBI ID   WP_250656393.1    Uniprot ID   -
Organism   Alkalimarinus coralli strain SCSIO 12817     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2943327..2954835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY525_RS13420 - 2943793..2943993 (+) 201 WP_250656387.1 DUF6316 family protein -
  MY525_RS13425 - 2944016..2944894 (+) 879 WP_250656388.1 transporter substrate-binding domain-containing protein -
  MY525_RS13430 - 2944905..2945333 (-) 429 WP_250656389.1 PilZ domain-containing protein -
  MY525_RS13435 - 2945727..2946992 (-) 1266 WP_250656390.1 ammonium transporter -
  MY525_RS13440 glnK 2947056..2947394 (-) 339 WP_250656391.1 P-II family nitrogen regulator -
  MY525_RS13445 - 2947913..2948167 (+) 255 WP_250656392.1 accessory factor UbiK family protein -
  MY525_RS13450 comM 2948327..2949835 (+) 1509 WP_250656393.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MY525_RS13455 - 2950065..2950295 (-) 231 WP_250656394.1 hypothetical protein -
  MY525_RS13460 - 2950473..2951270 (-) 798 WP_250656395.1 ABC transporter ATP-binding protein -
  MY525_RS13465 - 2951402..2952424 (-) 1023 WP_250656396.1 ABC transporter permease -
  MY525_RS13470 - 2952544..2953926 (-) 1383 WP_250656397.1 CmpA/NrtA family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54073.92 Da        Isoelectric Point: 8.3886

>NTDB_id=679195 MY525_RS13450 WP_250656393.1 2948327..2949835(+) (comM) [Alkalimarinus coralli strain SCSIO 12817]
MSLSIIYSRARVGVSSPLVTVETHISNGLPSLSIVGLPETAVKESKDRVRSALINSGFEFPNRRITINLAPADLPKEGGR
YDLAIALGILAASHQLPAEQLKDREFIGELALTGEVRSVKGSLPAAMACGKAQRTLYVPQANSDEAALCRSTRVLAAKHL
LDVCADIKGDSHLSELIFGESAQSGQAVPDLIEVKGQFLARRALEIAAAASLNLLFYGPPGTGKSMLASRLPGILPGLSE
QEALEVAAIHSISGQPVDVTSWGRRPFRTPHHTASAVALVGGGSSPKPGEISLAHNGVLFLDELPEYSRKVLEVLREPLE
SGQIAISRAASQITFPARFQLVAAMNPCPCGYHGHPSIECTDTPQQVAKYRQKLSGPLLDRFDMHVEVPAQAAEVLITKS
INTESSETVRARVLAAREIQQQRSGKANRELSGSELEEVCKLNNQSRALLENAMNRLGLSARAFHRVLRVARTIADLQQV
DTVSMQHITEALGYRKLDRKAT

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=679195 MY525_RS13450 WP_250656393.1 2948327..2949835(+) (comM) [Alkalimarinus coralli strain SCSIO 12817]
ATGTCACTTTCGATTATCTATAGTCGCGCCCGAGTCGGCGTGAGTTCTCCGTTGGTTACAGTGGAGACACATATCTCAAA
TGGTCTGCCCAGCCTTTCAATTGTCGGGCTTCCGGAAACTGCGGTCAAAGAGAGTAAAGACCGTGTAAGAAGCGCCCTTA
TTAATTCTGGCTTCGAGTTTCCCAATCGTCGAATCACTATCAACTTAGCCCCAGCTGACCTGCCCAAAGAGGGAGGGCGG
TATGACTTGGCGATTGCGTTAGGCATTCTCGCAGCCTCCCATCAGTTGCCGGCTGAACAGTTAAAAGACAGAGAGTTTAT
AGGTGAGCTTGCATTAACCGGGGAGGTTCGTTCAGTAAAAGGCAGTTTGCCAGCGGCGATGGCTTGCGGCAAAGCACAGC
GAACGCTTTATGTTCCGCAGGCGAATAGTGATGAGGCTGCTCTGTGTCGCTCAACCCGGGTATTAGCGGCCAAGCACCTG
CTTGATGTCTGTGCTGATATCAAAGGTGATAGTCATTTATCTGAGTTAATTTTTGGTGAATCTGCCCAGAGTGGTCAAGC
TGTGCCTGATTTGATCGAAGTGAAAGGGCAATTTCTGGCCCGGCGAGCGCTAGAGATAGCTGCGGCTGCCAGTCTCAACC
TGCTGTTTTACGGCCCGCCGGGTACCGGTAAAAGCATGTTGGCCTCTCGGTTGCCGGGTATTCTGCCTGGACTAAGTGAA
CAAGAGGCGTTAGAAGTTGCTGCCATTCACTCAATCAGTGGTCAACCTGTTGATGTTACAAGTTGGGGACGTCGCCCGTT
CAGAACGCCACACCATACCGCGTCTGCGGTTGCATTGGTGGGTGGCGGAAGTTCACCTAAGCCGGGTGAAATTTCACTGG
CTCACAACGGCGTACTGTTTCTGGATGAGCTACCAGAGTACAGCCGGAAAGTACTGGAGGTGCTGCGAGAGCCACTGGAA
AGCGGGCAAATAGCCATTTCAAGAGCGGCTTCACAGATTACCTTTCCAGCGCGATTTCAACTAGTCGCCGCTATGAACCC
ATGCCCCTGCGGTTACCATGGGCACCCCAGTATTGAGTGCACCGATACGCCTCAGCAGGTGGCCAAATACCGGCAAAAAC
TCTCAGGCCCCTTATTAGACCGTTTTGACATGCATGTCGAAGTGCCAGCGCAAGCTGCAGAGGTTTTGATCACCAAATCT
ATTAATACAGAAAGCAGTGAAACGGTCAGGGCGCGGGTGTTAGCCGCACGGGAAATTCAACAGCAGCGATCTGGCAAAGC
AAACCGGGAGTTGTCGGGCAGTGAGCTGGAAGAGGTCTGCAAGCTAAATAATCAATCTCGCGCACTGCTTGAAAACGCAA
TGAATCGACTGGGGCTTTCAGCGCGAGCCTTTCACCGAGTGTTACGTGTTGCGCGAACCATCGCAGACCTTCAACAGGTT
GATACGGTATCCATGCAGCATATAACAGAGGCGCTGGGGTATCGGAAGCTGGATCGCAAAGCGACTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.713

99.402

0.564
  comM Haemophilus influenzae Rd KW20

54.672

100

0.548
  comM Vibrio campbellii strain DS40M4

54.91

99.402

0.546
  comM Glaesserella parasuis strain SC1401

53.479

100

0.536
  comM Legionella pneumophila str. Paris

50.988

100

0.514
  comM Legionella pneumophila strain ERS1305867

50.988

100

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.337

100

0.466