Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MX621_RS29310 Genome accession   NZ_CP095923
Coordinates   6247178..6248671 (+) Length   497 a.a.
NCBI ID   WP_009878288.1    Uniprot ID   A0A367M9V8
Organism   Pseudomonas aeruginosa strain AR19438     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6242178..6253671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX621_RS29280 (MX621_29280) - 6242299..6243213 (-) 915 WP_003096438.1 fimbrial protein -
  MX621_RS29285 (MX621_29285) sutA 6243650..6243967 (-) 318 WP_003096440.1 transcriptional regulator SutA -
  MX621_RS29290 (MX621_29290) - 6244045..6244470 (-) 426 WP_003096441.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MX621_RS29295 (MX621_29295) - 6244731..6246059 (-) 1329 WP_003109815.1 ammonium transporter -
  MX621_RS29300 (MX621_29300) glnK 6246099..6246437 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  MX621_RS29305 (MX621_29305) - 6246877..6247137 (+) 261 WP_058131139.1 accessory factor UbiK family protein -
  MX621_RS29310 (MX621_29310) comM 6247178..6248671 (+) 1494 WP_009878288.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MX621_RS29315 (MX621_29315) betT 6248796..6250781 (+) 1986 WP_003096496.1 choline BCCT transporter BetT -
  MX621_RS29320 (MX621_29320) pchP 6250824..6251873 (-) 1050 WP_003110458.1 phosphorylcholine phosphatase -
  MX621_RS29325 (MX621_29325) - 6252024..6252929 (-) 906 WP_058131142.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53066.98 Da        Isoelectric Point: 7.9587

>NTDB_id=679126 MX621_RS29310 WP_009878288.1 6247178..6248671(+) (comM) [Pseudomonas aeruginosa strain AR19438]
MSLAIVHSRAQVGVEAPCVSVEAHLANGLPSLTLVGLPETAVRESKDRVRSALLNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASGQLPGTALDGLECLGELALSGAIRPVRGVLPAALAARDARRVLVVPKENAEEASLASGLTVFAVDHL
LEIAGHLSGQAPLPPYQARGLLRAPFPYPDLAEVQGQAAAKRALLVAAAGAHNLLLSGPPGTGKTLLASRLPGLLPALDE
DEALEVAAIHSVASHVPLRHWPQRPFRQPHHSASAPALVGGGSRPQPGEITLAHQGVLFLDELPEFERKVLEVLREPLES
GEIVIARANGRVRFPARFQLVAAMNPCPCGYLGDPSGRCRCTPEQVQRYRGKLSGPLLDRIDLHVSVLRESTSLQPGHGE
TATAEISERVGAARQRQLARQGCANAHLDLQAMHRNCALAEADRRWLEAAGERLELSLRALHRILKVARTLADLERIDAI
ERRHLAEALQYRATTST

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=679126 MX621_RS29310 WP_009878288.1 6247178..6248671(+) (comM) [Pseudomonas aeruginosa strain AR19438]
ATGTCCCTGGCGATTGTCCACAGCCGAGCCCAGGTCGGCGTCGAAGCCCCCTGCGTCAGCGTCGAGGCGCACCTGGCCAA
CGGCCTGCCTTCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTGCGCGAGAGCAAGGACCGCGTGCGCAGCGCCCTGC
TCAATGCCGGTTTCGACTTCCCCGCGCGGCGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCCAAGGACGGCGGTCGC
TTCGACCTGGCCATCGCACTCGGCATCCTCGCCGCCAGCGGCCAGTTGCCCGGCACCGCCCTCGACGGCCTGGAGTGCCT
CGGCGAACTGGCCCTGTCCGGGGCGATCCGGCCAGTGCGAGGCGTATTGCCGGCCGCGCTGGCGGCGCGCGACGCAAGGC
GCGTTCTGGTGGTACCGAAGGAAAATGCCGAAGAGGCCAGCCTGGCCAGCGGGCTGACGGTGTTCGCCGTGGACCACCTG
CTGGAGATCGCCGGACACCTCTCCGGCCAGGCCCCGCTGCCGCCCTACCAGGCCCGCGGCCTGCTCCGCGCGCCCTTCCC
TTATCCAGACCTGGCCGAGGTCCAGGGCCAGGCCGCCGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGCGCGCACAACC
TGTTGCTCAGCGGCCCGCCGGGCACCGGCAAGACCCTCCTGGCCAGCCGCCTGCCCGGCCTGCTGCCGGCGCTCGACGAG
GACGAGGCCCTGGAGGTCGCAGCGATCCATTCGGTGGCCAGCCACGTCCCCCTCAGGCACTGGCCGCAGCGACCGTTCCG
CCAGCCGCACCACTCCGCCTCCGCGCCGGCCCTGGTCGGCGGCGGCAGCCGCCCGCAGCCGGGCGAGATCACCCTGGCGC
ACCAGGGCGTGCTGTTCCTCGACGAACTGCCGGAGTTCGAGCGCAAGGTCCTGGAGGTCCTGCGCGAGCCGCTGGAAAGC
GGCGAGATCGTCATTGCCCGGGCCAACGGCCGGGTACGTTTCCCGGCGCGCTTCCAACTGGTGGCGGCGATGAATCCCTG
TCCCTGTGGCTACCTCGGCGATCCCAGCGGCCGCTGCCGCTGCACCCCGGAACAGGTCCAGCGCTACCGGGGCAAGCTGT
CCGGACCGCTGCTCGATCGCATCGACCTGCACGTCAGCGTGCTCCGCGAAAGCACCAGCCTGCAGCCAGGACACGGCGAA
ACCGCTACCGCCGAGATCAGCGAACGGGTTGGCGCCGCACGGCAACGGCAACTGGCCCGCCAGGGCTGCGCCAATGCCCA
TCTCGACCTCCAGGCGATGCACCGCAATTGTGCACTCGCCGAAGCGGACCGCCGCTGGCTGGAGGCTGCCGGAGAGCGCC
TGGAACTTTCCTTGCGCGCCTTGCATCGCATACTCAAGGTGGCCCGGACGCTGGCCGACCTGGAGCGCATCGATGCCATC
GAACGCCGGCACCTGGCGGAAGCCCTGCAGTATCGGGCAACGACCTCCACGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A367M9V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.452

99.799

0.563
  comM Haemophilus influenzae Rd KW20

55.01

100

0.563
  comM Vibrio cholerae strain A1552

56.048

99.799

0.559
  comM Glaesserella parasuis strain SC1401

55.09

100

0.555
  comM Legionella pneumophila str. Paris

50.301

100

0.505
  comM Legionella pneumophila strain ERS1305867

50.301

100

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.154

100

0.471