Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LAB08_RS01845 Genome accession   NZ_AP017423
Coordinates   405207..406268 (+) Length   353 a.a.
NCBI ID   WP_096513797.1    Uniprot ID   -
Organism   Pseudomonas izuensis strain LAB-08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 400207..411268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAB08_RS01835 (LAB08_R03670) - 401021..402289 (+) 1269 WP_096513799.1 malic enzyme-like NAD(P)-binding protein -
  LAB08_RS01840 (LAB08_R03680) - 402551..404992 (-) 2442 WP_096513798.1 penicillin-binding protein 1A -
  LAB08_RS01845 (LAB08_R03690) comM 405207..406268 (+) 1062 WP_096513797.1 pilus assembly protein PilM Machinery gene
  LAB08_RS01850 (LAB08_R03700) - 406268..406834 (+) 567 WP_096513796.1 PilN domain-containing protein -
  LAB08_RS01855 (LAB08_R03710) pilO 406831..407454 (+) 624 WP_096513795.1 type 4a pilus biogenesis protein PilO -
  LAB08_RS01860 (LAB08_R03720) - 407451..407978 (+) 528 WP_096513794.1 pilus assembly protein PilP -
  LAB08_RS01865 (LAB08_R03730) pilQ 407992..410073 (+) 2082 WP_096513793.1 type IV pilus secretin PilQ Machinery gene
  LAB08_RS01870 (LAB08_R03740) aroK 410078..410596 (+) 519 WP_056725695.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38155.69 Da        Isoelectric Point: 4.8268

>NTDB_id=67907 LAB08_RS01845 WP_096513797.1 405207..406268(+) (comM) [Pseudomonas izuensis strain LAB-08]
MPGLFNKKANTLLGIDISSTSVKLLELSRQGERYRVEAYAVEPLPASAVIEKNIAELEGVGQALARVLTKAKTSLRNVAV
AVAGSAVITKTIEMDAGLSDDEMESQLKIEADQYIPYPLDEVAIDFEVQGVSTRNPERVNVLLAACRKENVEVREAALTL
AGLTARVVDVEAYALERSFGLLENHSAISEGRLVAVVDIGATMTTLSVLLGGRIIYTREQLFGGRQLTEEIQRRYGLTTE
QAGLAKKQGGLPDDYVSEVLQPFREALVQQVSRSLQFFFASGQYHAVDHILLAGGTASVSGLDRLIEQQLRTPTQVANPF
SNMMLSSKVNAMALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=67907 LAB08_RS01845 WP_096513797.1 405207..406268(+) (comM) [Pseudomonas izuensis strain LAB-08]
GTGCCAGGACTCTTCAATAAAAAAGCCAATACGCTTTTGGGCATCGACATCAGCTCCACATCGGTAAAACTGCTGGAACT
GAGCCGCCAGGGCGAACGCTATCGGGTCGAGGCCTATGCGGTCGAGCCACTGCCCGCCAGCGCGGTTATCGAGAAGAACA
TCGCCGAACTCGAAGGTGTGGGTCAGGCGCTCGCTCGTGTGCTGACCAAGGCCAAAACCAGCCTCAGGAACGTGGCCGTG
GCCGTAGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGATGCCGGTCTTTCCGACGACGAGATGGAAAGCCAGCT
GAAAATCGAGGCCGATCAGTACATCCCCTATCCACTGGACGAGGTTGCCATCGACTTCGAAGTCCAGGGTGTGTCAACGC
GCAACCCCGAGCGGGTCAATGTGTTGCTCGCGGCCTGCCGCAAGGAAAACGTCGAAGTTCGGGAAGCCGCCCTGACGCTG
GCCGGCCTGACCGCTCGCGTGGTCGACGTGGAGGCTTATGCCCTGGAGCGATCATTCGGCTTGCTGGAAAATCACTCGGC
AATCTCCGAGGGGCGCCTGGTGGCGGTGGTCGACATCGGCGCAACCATGACGACGCTGAGCGTGCTGCTTGGCGGGCGGA
TCATCTACACCCGTGAACAGTTGTTCGGTGGTCGTCAACTGACCGAAGAGATCCAGCGTCGGTACGGCCTGACGACCGAG
CAGGCGGGGCTGGCGAAGAAGCAGGGGGGGTTGCCGGACGATTACGTCAGCGAGGTATTGCAGCCGTTTCGCGAGGCATT
GGTGCAGCAGGTCTCGCGTTCACTGCAGTTTTTCTTTGCCTCCGGCCAGTACCACGCGGTCGATCACATTCTGTTGGCGG
GTGGCACTGCGTCAGTCTCCGGTCTGGATCGACTGATCGAGCAGCAATTACGCACGCCGACGCAGGTGGCCAACCCGTTT
TCCAACATGATGCTGAGCAGCAAGGTCAACGCCATGGCGCTGGCCAGCGACGCGCCCGCCCTGATGATCGCCTGCGGGCT
GGCCCTCAGGAGTTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

54.571

99.15

0.541
  pilM Acinetobacter baumannii D1279779

54.286

99.15

0.538
  comM Acinetobacter baylyi ADP1

53.143

99.15

0.527
  pilM Legionella pneumophila strain ERS1305867

47.74

100

0.479

Multiple sequence alignment