Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MYA84_RS00965 Genome accession   NZ_CP095872
Coordinates   207279..208766 (-) Length   495 a.a.
NCBI ID   WP_184103349.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain H4-3-C1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 202279..213766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA84_RS00935 (MYA84_00930) - 202309..202707 (+) 399 WP_004810187.1 MAPEG family protein -
  MYA84_RS00940 (MYA84_00935) ppa 202828..203364 (+) 537 WP_004281037.1 inorganic diphosphatase -
  MYA84_RS00945 (MYA84_00940) - 203464..204789 (-) 1326 WP_004810184.1 OprD family outer membrane porin -
  MYA84_RS00950 (MYA84_00945) - 205299..205616 (+) 318 WP_004810182.1 TorF family putative porin -
  MYA84_RS00955 (MYA84_00950) - 205760..206062 (+) 303 WP_071851118.1 hypothetical protein -
  MYA84_RS00960 (MYA84_00955) - 206436..207218 (+) 783 WP_111810655.1 TorF family putative porin -
  MYA84_RS00965 (MYA84_00960) comM 207279..208766 (-) 1488 WP_184103349.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MYA84_RS00970 (MYA84_00965) - 208831..209058 (-) 228 WP_004810171.1 accessory factor UbiK family protein -
  MYA84_RS00975 (MYA84_00970) glnK 209335..209673 (+) 339 WP_004281042.1 P-II family nitrogen regulator -
  MYA84_RS00980 (MYA84_00975) - 209733..211142 (+) 1410 WP_004810169.1 ammonium transporter -
  MYA84_RS00985 (MYA84_00980) nrdR 211282..211749 (+) 468 WP_004810168.1 transcriptional regulator NrdR -
  MYA84_RS00990 (MYA84_00985) ribD 211752..212840 (+) 1089 WP_184103352.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54489.56 Da        Isoelectric Point: 7.3779

>NTDB_id=678930 MYA84_RS00965 WP_184103349.1 207279..208766(-) (comM) [Acinetobacter schindleri strain H4-3-C1]
MSFAKIHTRGLLGLHAPLIEVEVHVSQGMPSLTIVGLPEAAVRESKDRVRSAILNSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILMASGQLPENCTDGMEFIGELALDGQLRPITGTLSIAIACQQSQHELILPKENAQEACQLPDFRVFAAAHL
KEVCDHLNKLAPLVQMQARPQVNHSDSRFDLADVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLASILPPLNT
EENLEVASIYSIANNSHTFGQRPFRAPHHTASAVALVGGGSHPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLVAAMNPCPCGYAFNQDIRCQCSPEMIKRYQNRISGPLLDRIDLHIDVPPLQAHELQSTQPVE
DSATVRERVITAYELQIQRQNKLNMALNPKELEQFAPLNAQTSKMFELAQQKLNLSARAYHRVLRVARSIADLAENSEIQ
PQHLSEALSYRGQQS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=678930 MYA84_RS00965 WP_184103349.1 207279..208766(-) (comM) [Acinetobacter schindleri strain H4-3-C1]
ATGTCTTTTGCTAAAATTCATACCCGGGGATTGCTGGGACTGCATGCCCCTTTAATAGAAGTGGAAGTTCATGTCAGTCA
GGGCATGCCTTCCTTAACTATTGTTGGACTGCCCGAAGCGGCGGTTCGGGAAAGTAAGGATCGGGTTCGTTCTGCTATTT
TGAATAGTGGCTACCAGTTCCCGACCAAACGCTTAACTATTAACCTGGCTCCTGCTGACCTGCCCAAAGACGGTTCACGT
TTAGATCTGCCAATTGCTTTAGGGATTCTGATGGCTTCAGGTCAACTCCCTGAAAACTGTACTGATGGAATGGAATTCAT
CGGTGAACTTGCTTTAGATGGTCAACTCCGCCCCATCACTGGTACGCTTAGTATTGCGATTGCCTGTCAACAATCGCAGC
ATGAACTGATTCTACCTAAGGAAAATGCTCAGGAAGCCTGTCAGTTACCTGATTTTCGGGTATTTGCCGCTGCTCATCTA
AAAGAAGTTTGTGATCATTTAAATAAACTCGCACCTTTAGTCCAGATGCAGGCCCGACCACAGGTGAATCACTCAGATTC
TCGCTTTGATTTAGCCGATGTCAAAGGCCAGCTGCGCCCAAGACGGGCTTTGGAAATTGCTGCTGCAGGTGGACATTCTT
TATTATTTAGAGGACCTCCTGGAACCGGTAAAACTTTACTGGCTTCGCGGCTAGCCAGTATCTTGCCGCCTCTCAATACT
GAAGAAAATCTTGAAGTCGCCAGTATTTATTCTATTGCCAATAATAGTCATACTTTTGGACAACGTCCTTTCCGCGCGCC
ACATCATACCGCGTCTGCAGTTGCCCTGGTCGGTGGAGGATCGCATCCTAAACCAGGTGAAATTACGCTGGCACATTTAG
GAGTGTTATTTCTCGACGAACTGCCGGAATTTGACAGGAAAGTTCTTGAAGTATTACGTCAACCTTTGGAATCTAAGGAA
ATTGTAATTTCGCGTGCCTCTCGACAAATTACTTTCCCAGCCAACTTTCAGCTGGTTGCAGCGATGAATCCCTGCCCTTG
TGGTTATGCTTTCAATCAGGATATTCGCTGCCAGTGTTCTCCAGAAATGATCAAGCGTTATCAGAACCGGATTTCTGGGC
CATTACTGGATCGGATTGACCTGCATATCGATGTGCCTCCTCTGCAAGCTCATGAATTACAATCTACACAACCGGTAGAA
GATTCTGCAACCGTTAGGGAGCGTGTGATAACTGCCTACGAACTGCAAATACAAAGACAGAACAAGCTGAATATGGCATT
AAACCCAAAAGAATTAGAGCAATTTGCGCCACTAAATGCTCAGACCAGTAAAATGTTTGAACTTGCCCAACAAAAGTTAA
ATTTATCTGCCCGTGCTTATCATAGGGTATTACGAGTAGCACGAAGTATAGCTGATTTAGCTGAGAATTCAGAAATTCAG
CCTCAGCATTTATCGGAAGCTTTATCTTATCGAGGTCAGCAAAGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.906

100

0.533
  comM Vibrio cholerae strain A1552

51.919

100

0.519
  comM Glaesserella parasuis strain SC1401

51.2

100

0.517
  comM Vibrio campbellii strain DS40M4

50.909

100

0.509
  comM Legionella pneumophila str. Paris

49.194

100

0.493
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.493
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.012

100

0.477