Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MYA83_RS29325 Genome accession   NZ_CP095871
Coordinates   6438908..6440404 (+) Length   498 a.a.
NCBI ID   WP_104995010.1    Uniprot ID   A0A2L1JCF5
Organism   Pseudomonas palleroniana strain B-BH16-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6433908..6445404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYA83_RS29295 (MYA83_29120) - 6434384..6435079 (+) 696 WP_060753620.1 HAD family hydrolase -
  MYA83_RS29300 (MYA83_29125) sutA 6435278..6435604 (-) 327 WP_060753621.1 transcriptional regulator SutA -
  MYA83_RS29305 (MYA83_29130) - 6435708..6436133 (-) 426 WP_060753622.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  MYA83_RS29310 (MYA83_29135) - 6436345..6437685 (-) 1341 WP_104995009.1 ammonium transporter -
  MYA83_RS29315 (MYA83_29140) glnK 6437722..6438060 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  MYA83_RS29320 (MYA83_29145) - 6438483..6438743 (+) 261 WP_060753624.1 accessory factor UbiK family protein -
  MYA83_RS29325 (MYA83_29150) comM 6438908..6440404 (+) 1497 WP_104995010.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MYA83_RS29330 (MYA83_29155) - 6440401..6440985 (-) 585 WP_244384871.1 TetR/AcrR family transcriptional regulator -
  MYA83_RS29335 (MYA83_29160) - 6441099..6442013 (+) 915 WP_060753642.1 ABC transporter six-transmembrane domain-containing protein -
  MYA83_RS29340 (MYA83_29165) - 6442037..6443278 (-) 1242 WP_419794305.1 benzoate/H(+) symporter BenE family transporter -
  MYA83_RS29345 (MYA83_29170) - 6443490..6445010 (+) 1521 WP_419794306.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53168.45 Da        Isoelectric Point: 8.4361

>NTDB_id=678922 MYA83_RS29325 WP_104995010.1 6438908..6440404(+) (comM) [Pseudomonas palleroniana strain B-BH16-1]
MSLAIVHSRAQVGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNCALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALMLDDVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPYKSDGLLCLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYMGEPSGRCRCTPEQVQRYRNKLSGPLLDRIDLHLTVAREATALNPTSKA
GDNTAQASARVAQARDRQQRRQGCANAFLDLPGLREHCKLAKVDEGWLESACERLTLSLRAAHRLLKVARTLADLEQADS
ITRTHLAEALQYRPAATG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=678922 MYA83_RS29325 WP_104995010.1 6438908..6440404(+) (comM) [Pseudomonas palleroniana strain B-BH16-1]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGGTTGGCGTCGAAGCCCCCGCAGTGACCGTCGAAGTGCACATGGCCAA
TGGTCTGCCTTCGCTCACATTGGTGGGTCTGCCGGAAACGGCTGTGAAGGAAAGCAAGGACCGCGTGCGCAGTGCGATCC
TCAACTGCGCACTGCAATACCCGTCCCGCCGCATCACCCTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGATCTGGCGATTGCCTTGGGGATCCTGGCGGCCAGTGTGCAGGTGCCGGCATTGATGCTCGATGATGTGGAATGCCT
GGGAGAGTTGGCACTGTCCGGCGAGGTACGGGCAGTCAAAGGGGTGCTGCCGGCGGCGCTGGCTGCGCGCAAGGCCGGGC
GCACTGTAATAGTGCCTCGGGCGAATGCCGAAGAAGCCTGCCTGGCGTCGGGGTTGAAGGTGATTGCGGTGGATCACCTG
CTGCAGGTGGTGGCGCACTTGAATGGGCATGTGCCGATTGAGCCCTATAAGTCCGACGGCTTGCTGTGCCTGAACAAACC
CTATCCGGACCTGAGCGAAGTACAGGGCCAGCTTGCGGCCAAGCGCGCGTTGCTGATTGCCGCTGCGGGCGCGCATAACC
TGCTGCTCAGCGGGCCGCCCGGCACCGGCAAGACCTTGCTCGCCAGCCGGCTGCCCGGGTTATTGCCACCGTTGAGTGAG
CAGGAGGCGTTGGAAGTCGCGGCGATTCAATCAGTAGTCAGCCTGGCGCCGCTGAGCCATTGGCCGCACCGGCCCTTTCG
CCAGCCGCACCACTCGGCTTCCGGGCCGGCGCTGGTAGGCGGCGGTTCAAAACCACAGCCGGGCGAAATTACCCTGGCCC
ATCACGGCGTGTTGTTTCTGGATGAGTTGCCAGAGTTTGATCGCAAGGTACTTGAGGTGCTGCGCGAACCCCTGGAATCA
GGGCATATCGTCATCTCCCGCGCCCGTGATCGCGTCAGTTTCCCGGCCCGCTTCCAGTTGGTCGCCGCCATGAACCCCTG
CCCTTGCGGCTACATGGGCGAACCCAGTGGACGCTGCCGCTGTACACCGGAGCAGGTCCAGCGCTACCGCAACAAACTCT
CGGGGCCATTGCTGGATCGCATCGACCTGCATCTCACCGTGGCCCGGGAAGCCACCGCGCTGAACCCAACCTCAAAAGCT
GGCGATAACACAGCCCAGGCATCGGCACGGGTCGCTCAGGCCCGCGATCGCCAACAGCGACGCCAGGGCTGTGCAAATGC
TTTCCTTGATCTGCCGGGGTTGCGCGAGCACTGCAAGCTGGCCAAGGTTGATGAAGGCTGGCTGGAAAGTGCCTGTGAAC
GGCTGACGCTTTCCCTGCGCGCAGCCCATCGGCTACTCAAGGTGGCGCGTACGCTTGCCGACCTTGAGCAAGCCGACAGC
ATCACCCGGACTCATTTGGCGGAGGCCTTGCAGTATCGGCCTGCGGCGACCGGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L1JCF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.364

99.398

0.56
  comM Glaesserella parasuis strain SC1401

55.489

100

0.558
  comM Vibrio cholerae strain A1552

55.152

99.398

0.548
  comM Haemophilus influenzae Rd KW20

54.6

100

0.548
  comM Legionella pneumophila str. Paris

50.202

99.598

0.5
  comM Legionella pneumophila strain ERS1305867

50.202

99.598

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47