Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MYG04_RS14090 Genome accession   NZ_CP095856
Coordinates   2911908..2912393 (+) Length   161 a.a.
NCBI ID   WP_000157061.1    Uniprot ID   A0AAU7IP99
Organism   Escherichia coli strain EC6563     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2911908..2925219 2911908..2912393 within 0


Gene organization within MGE regions


Location: 2911908..2925219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MYG04_RS14090 (MYG04_14090) ssb 2911908..2912393 (+) 486 WP_000157061.1 single-stranded DNA-binding protein Machinery gene
  MYG04_RS14095 (MYG04_14095) trbC 2912447..2914768 (+) 2322 WP_001164055.1 F-type conjugative transfer protein TrbC -
  MYG04_RS14100 (MYG04_14100) - 2914804..2914971 (-) 168 WP_001300931.1 hypothetical protein -
  MYG04_RS14110 (MYG04_14110) - 2916372..2916827 (-) 456 Protein_2770 hypothetical protein -
  MYG04_RS14115 (MYG04_14115) - 2916876..2917031 (-) 156 WP_000074142.1 hypothetical protein -
  MYG04_RS14120 (MYG04_14120) - 2917651..2918031 (+) 381 Protein_2772 integrase core domain-containing protein -
  MYG04_RS14125 (MYG04_14125) - 2918310..2921807 (+) 3498 WP_001038839.1 autotransporter outer membrane beta-barrel domain-containing protein -
  MYG04_RS14130 (MYG04_14130) - 2921982..2922187 (-) 206 Protein_2774 hypothetical protein -
  MYG04_RS14135 (MYG04_14135) - 2922186..2922299 (+) 114 Protein_2775 alkaline phosphatase -
  MYG04_RS14140 (MYG04_14140) - 2922667..2922861 (-) 195 Protein_2776 hypothetical protein -
  MYG04_RS14145 (MYG04_14145) - 2922840..2923085 (+) 246 Protein_2777 transposase -
  MYG04_RS14150 (MYG04_14150) - 2923153..2924304 (+) 1152 WP_032304071.1 IS30-like element IS30 family transposase -
  MYG04_RS14155 (MYG04_14155) - 2924314..2925219 (+) 906 Protein_2779 IS3-like element IS911 family transposase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 17685.62 Da        Isoelectric Point: 7.2017

>NTDB_id=678850 MYG04_RS14090 WP_000157061.1 2911908..2912393(+) (ssb) [Escherichia coli strain EC6563]
MASKGINKVILIGYLGQDPDIRYMPNGGAVASIALATSETWRDKQTGEMREQTEWHRVVLFGKLAEVASEYLRKGAQVYI
DGQLRTRKWTDQTGQERYTTEVVVHTGGTMQMLGSRQNSAQGGRGQPQQPQQGRQFSGNSPSPGNTAMSGSFSDDDDSIP
F

Nucleotide


Download         Length: 486 bp        

>NTDB_id=678850 MYG04_RS14090 WP_000157061.1 2911908..2912393(+) (ssb) [Escherichia coli strain EC6563]
ATGGCCTCTAAAGGTATTAACAAAGTTATTCTGATAGGGTATCTGGGTCAGGACCCGGATATTCGCTATATGCCAAACGG
CGGCGCTGTGGCCAGCATTGCGCTGGCCACCTCCGAAACCTGGCGGGACAAACAGACAGGGGAGATGCGGGAACAAACCG
AATGGCACCGCGTGGTGCTGTTCGGCAAACTGGCGGAAGTAGCCAGTGAATACCTGCGCAAAGGAGCTCAGGTGTACATC
GATGGTCAGCTGCGTACCCGAAAATGGACCGACCAGACCGGCCAGGAACGCTACACGACTGAAGTGGTGGTGCATACCGG
CGGTACCATGCAGATGCTGGGCTCCCGGCAGAATAGTGCACAGGGTGGCCGGGGACAGCCTCAACAACCACAACAGGGCA
GACAGTTTTCAGGTAATTCGCCATCTCCGGGCAATACCGCCATGTCCGGCAGTTTCAGCGACGATGACGACAGTATCCCG
TTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.757

100

0.646
  ssb Glaesserella parasuis strain SC1401

52.632

94.41

0.497
  ssb Neisseria meningitidis MC58

41.477

100

0.453
  ssb Neisseria gonorrhoeae MS11

41.477

100

0.453
  ssb Latilactobacillus sakei subsp. sakei 23K

32.402

100

0.36