NTDB

Overview

Name	comM	Type	Machinery gene
Locus tag	MYF86_RS05295	Genome accession	NZ_CP095841
Coordinates	1112877..1114391 (-)	Length	504 a.a.
NCBI ID	WP_247823773.1	Uniprot ID	-
Organism	Aeromonas veronii strain AV040
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1107877..1119391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MYF86_RS05265 (MYF86_05265)	pncB	1107914..1109092 (-)	1179	WP_005342020.1	nicotinate phosphoribosyltransferase	-
MYF86_RS05270 (MYF86_05270)	-	1109094..1109729 (-)	636	WP_005357452.1	nicotinamidase	-
MYF86_RS05275 (MYF86_05275)	-	1109804..1110454 (+)	651	WP_111900980.1	DNA mismatch repair protein MutT	-
MYF86_RS05280 (MYF86_05280)	-	1110451..1110954 (+)	504	WP_247823770.1	DUF523 domain-containing protein	-
MYF86_RS05285 (MYF86_05285)	-	1110879..1111844 (-)	966	WP_247823771.1	acyltransferase	-
MYF86_RS05290 (MYF86_05290)	-	1111851..1112750 (-)	900	WP_247823772.1	acyltransferase	-
MYF86_RS05295 (MYF86_05295)	comM	1112877..1114391 (-)	1515	WP_247823773.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
MYF86_RS05300 (MYF86_05300)	ilvG	1114776..1116422 (+)	1647	WP_216976577.1	acetolactate synthase 2 catalytic subunit	-
MYF86_RS05305 (MYF86_05305)	ilvM	1116419..1116697 (+)	279	WP_005342011.1	acetolactate synthase 2 small subunit	-
MYF86_RS05310 (MYF86_05310)	-	1116710..1117654 (+)	945	WP_204380370.1	branched-chain amino acid transaminase	-

Sequence

Protein

Download Length: 504 a.a. Molecular weight: 54580.46 Da Isoelectric Point: 7.4493

                                >NTDB_id=678691 MYF86_RS05295 WP_247823773.1 1112877..1114391(-) (comM) [Aeromonas veronii strain AV040]

MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR

FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL

LAVTAWLAGQYELPLPDPQNAESLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ

EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET

GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG

ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSAQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI

GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide

Download Length: 1515 bp

                                >NTDB_id=678691 MYF86_RS05295 WP_247823773.1 1112877..1114391(-) (comM) [Aeromonas veronii strain AV040]

ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATCGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTCTCCAA

CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC

TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACCGTCAATCTGGCGCCCGCTGACCTGCCCAAGGAGGGGGGCCGT

TTCGATCTGGCTATCGCCATCGGCATTCTCGCCGCTTCTAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT

AGGGGAATTGGCCCTCACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTGCCCGCCGTATTGGCCTGCCGTGATGCGGGGC

GCACCCTGCTGGTACCGCGAGAGAACGGCCCGGAAGCTTCCCTTATTCAGGATGCAGAGGTGCGCACCGCCCACCAGTTG

CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCGCTGCCGGATCCCCAAAACGCGGAGAGCCTGCCCGATGT

ACCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGAGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC

TGTTCATCGGCCCGCCCGGCACAGGCAAGAGCATGTTGGCGAGCCGATTGCCCGGCATCTTGCCACCGCTGAGCGAACAG

GAGGCGCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCACGCGCTGGTCACTGGCACCACAGGCCATACCG

CACGCCGCACCACAGTGCCTCGGCAGTGGCGCTGGTGGGCGGTGGCAGCCACCCGCGGCCCGGCGAAATTTCGTTGGCCC

ACAACGGGGTGCTGTTTCTGGATGAATTGCCCGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACG

GGCCACATCACCATCAGCCGGGCCGCCCGTCAGGTGGATTTCCCCGCCCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG

CCCCTGCGGCCACTATGGCGACGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAACTCTCTGGCC

CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGCAGCCTCACCGGCAAGGCGGAGCGAGGG

GAGTCGAGCCAACAGATCCGCGATCGGGTGCTGGCGGCACGGGAGCGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT

GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCAGCGCAAGATGCCGAATTTTTGGAGAATGCGATCCAGAAGC

TGGGGCTCAGTATCCGGGCCTGGCACCGCATCCTGCGGGTGTCGCGTACCATCGCCGATCTGGCCGGGCAACCCGCTATC

GGCAAGGAGCATCTTATCGAGGCGCTCGGCTACCGGGCCATGGATCGGCTGCTATCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comM	Vibrio cholerae strain A1552	63.147	99.603	0.629
comM	Haemophilus influenzae Rd KW20	61.66	100	0.619
comM	Vibrio campbellii strain DS40M4	62.151	99.603	0.619
comM	Glaesserella parasuis strain SC1401	61.144	100	0.615
comM	Legionella pneumophila str. Paris	50.992	100	0.51
comM	Legionella pneumophila strain ERS1305867	50.992	100	0.51
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.245	100	0.464

Detailed information NTG0678691