Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MMY93_RS27290 Genome accession   NZ_CP095761
Coordinates   5688994..5690514 (+) Length   506 a.a.
NCBI ID   WP_009653133.1    Uniprot ID   A0A2J4REJ2
Organism   Klebsiella michiganensis strain K254     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5683994..5695514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMY93_RS27270 (MMY93_27270) - 5685559..5686488 (-) 930 WP_004097473.1 branched-chain amino acid transaminase -
  MMY93_RS27275 (MMY93_27275) ilvM 5686505..5686762 (-) 258 WP_004097471.1 acetolactate synthase 2 small subunit -
  MMY93_RS27280 (MMY93_27280) ilvG 5686759..5688405 (-) 1647 WP_042927764.1 acetolactate synthase 2 catalytic subunit -
  MMY93_RS27285 (MMY93_27285) ilvL 5688545..5688643 (-) 99 WP_001311244.1 ilv operon leader peptide -
  MMY93_RS27290 (MMY93_27290) comM 5688994..5690514 (+) 1521 WP_009653133.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MMY93_RS27295 (MMY93_27295) - 5690538..5690876 (-) 339 WP_004097464.1 DUF413 domain-containing protein -
  MMY93_RS27300 (MMY93_27300) hdfR 5690995..5691816 (+) 822 WP_004097454.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55225.66 Da        Isoelectric Point: 8.3579

>NTDB_id=678227 MMY93_RS27290 WP_009653133.1 5688994..5690514(+) (comM) [Klebsiella michiganensis strain K254]
MSLAIVYTRAALGIGAPLITVEVHISNGLPGLTMVGLPETTVREARDRVRSAIINSGYAYPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLKAPRLNQYEFVGELALTGALRGVPGAISSAMEAIKAGRRIVVSNENSPEVGLIGGSDCLIATDL
QEVCAFLEGRHTLANPLPEGEYSDETSVDLRDVIGQRQGKRALEIIAAGGHNLLMIGPPGTGKTMLASRLPGLLPPLSNQ
EALESAAILSLVDSRHAMKNWRRRPFRAPHHSASLAAMVGGGSIPAPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GVIHISRTRAKIDYPARFQLIAAMNPSPTGHYQGQHNRASPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGVLSQGTNEE
ESSACVRQRVLAARERQLSRQKKLNAHLGNDEMKICCRLHKDDAVWLEQTLIQLGLSIRAWQRLIKVSRTIADIEAVERI
ERHHLQEALGYRAIDRMLSHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=678227 MMY93_RS27290 WP_009653133.1 5688994..5690514(+) (comM) [Klebsiella michiganensis strain K254]
ATGTCACTCGCCATTGTTTACACCCGCGCCGCTCTCGGGATCGGTGCCCCGCTTATCACGGTTGAAGTTCATATCAGCAA
CGGGCTCCCAGGCCTGACAATGGTAGGACTGCCTGAAACAACGGTTAGAGAAGCGCGTGACCGGGTACGTAGTGCGATTA
TCAACAGCGGTTACGCTTATCCGGCGAAAAAAATCACCATCAATCTGGCCCCGGCCGATCTGCCAAAAGAAGGGGGAAGA
TATGATTTACCTATCGCTCTCGCGCTTCTGGTGGCCTCAGAGCAGCTAAAGGCTCCCAGGCTAAATCAATATGAGTTTGT
CGGCGAGCTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCTGGTGCCATATCCAGCGCCATGGAGGCCATAAAAGCGGGGC
GGAGGATTGTTGTCTCTAATGAGAATTCTCCAGAGGTGGGGTTAATTGGCGGCAGTGACTGCCTTATCGCCACCGATCTC
CAGGAAGTCTGCGCTTTTCTAGAAGGTCGACATACCCTGGCTAACCCCCTTCCAGAAGGAGAATATTCGGATGAAACATC
GGTTGATCTGCGTGATGTTATTGGCCAGCGGCAGGGGAAACGAGCGCTGGAAATCATCGCTGCAGGTGGTCACAACCTGC
TGATGATAGGCCCGCCCGGCACAGGAAAAACGATGCTCGCCAGTCGATTACCGGGACTACTGCCGCCGCTGAGTAATCAG
GAAGCGCTGGAAAGCGCGGCAATACTTAGCCTGGTCGATTCCAGGCATGCCATGAAAAATTGGCGCCGCAGGCCCTTTCG
TGCCCCGCATCATAGCGCCTCCCTGGCGGCCATGGTGGGCGGAGGCTCAATTCCGGCACCGGGAGAGATCTCCCTTGCCC
ATAACGGAGTCCTGTTCCTGGATGAGCTGCCTGAATTCGAACGCAGGGTGCTGGATGCGTTACGCGAACCCATTGAGTCA
GGGGTTATCCATATCTCACGCACGCGCGCCAAAATCGATTATCCAGCCCGTTTCCAGCTTATTGCAGCGATGAATCCCAG
CCCGACAGGGCACTATCAGGGCCAGCATAATCGCGCTTCACCGGAACAGACGCTACGCTACCTGGGTCGTTTATCCGGCC
CGTTTCTTGACCGATTCGATCTCTCCCTGGAGATCCCGCTTCCGCCACCGGGGGTACTCAGCCAGGGAACAAACGAAGAG
GAAAGTAGCGCCTGCGTACGCCAACGTGTTCTGGCCGCACGCGAAAGGCAGCTATCGCGGCAGAAAAAACTTAACGCGCA
TTTGGGAAATGATGAGATGAAAATCTGCTGCCGGCTTCATAAAGATGACGCTGTCTGGCTGGAGCAGACGCTAATACAGC
TCGGGCTTTCAATCCGCGCCTGGCAGCGCCTGATTAAAGTGTCCCGAACTATTGCCGATATTGAGGCAGTCGAACGCATC
GAACGCCATCATTTGCAGGAGGCTCTCGGCTACCGGGCAATAGACAGAATGCTGAGCCATCTACAAAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J4REJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.04

99.407

0.597
  comM Haemophilus influenzae Rd KW20

58.904

100

0.595
  comM Glaesserella parasuis strain SC1401

59.172

100

0.593
  comM Vibrio campbellii strain DS40M4

59.562

99.209

0.591
  comM Legionella pneumophila str. Paris

47.984

98.024

0.47
  comM Legionella pneumophila strain ERS1305867

47.984

98.024

0.47
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.301

100

0.441