Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   NALG_RS03520 Genome accession   NZ_AP017373
Coordinates   722482..723486 (-) Length   334 a.a.
NCBI ID   WP_096368585.1    Uniprot ID   -
Organism   Lactococcus formosensis strain 122061     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 717482..728486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NALG_RS03505 (NALG_0733) - 719004..719912 (-) 909 WP_017368906.1 peptidyl-prolyl cis-trans isomerase -
  NALG_RS03510 (NALG_0734) - 720010..720693 (-) 684 WP_096368583.1 O-methyltransferase -
  NALG_RS03515 (NALG_0735) pepF 720693..722498 (-) 1806 WP_096368584.1 oligoendopeptidase F Regulator
  NALG_RS03520 (NALG_0736) coiA 722482..723486 (-) 1005 WP_096368585.1 competence protein CoiA family protein Machinery gene
  NALG_RS03525 (NALG_0737) - 723562..724662 (-) 1101 WP_096368586.1 YdcF family protein -
  NALG_RS03530 (NALG_0738) - 724740..726161 (-) 1422 WP_017368901.1 NCS2 family permease -
  NALG_RS03535 (NALG_0739) - 726524..727348 (+) 825 WP_096368587.1 HAD family hydrolase -
  NALG_RS03540 (NALG_0740) - 727398..728102 (-) 705 WP_096368588.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 39986.88 Da        Isoelectric Point: 7.9506

>NTDB_id=67798 NALG_RS03520 WP_096368585.1 722482..723486(-) (coiA) [Lactococcus formosensis strain 122061]
MLNALDKDGNTINLFDDKPINPPFYCPACKSSLRLKRGKIKIPHFAHISLQNCDSWSESESAQHLGLKLSLYQWLKEKEK
VELEKYVPEIKQTADLLVNDKLAIEIQCSPLSLQRLEERTVSYKEKGYYVLWLQGRDLWLKKTLSSLQKNLLYYSVERGF
YFWELDWDRKKLRLKSLIHQDLKGRLICLTEEFDFFQESLLELLRQPFLKGENLSIDVPEQEELQFFIQKQLYYQVPKWI
KVQEKYYEQGKNLLDLNWKKCYWAPPGLNLLTFDFINERSESFFQVDTSLEKYYQGFYESFQSQEHERLHTPSYYAIIKD
KNKVKNGEWHGKKT

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=67798 NALG_RS03520 WP_096368585.1 722482..723486(-) (coiA) [Lactococcus formosensis strain 122061]
ATGTTGAATGCATTGGATAAAGACGGAAATACAATTAATCTCTTTGATGATAAACCCATTAATCCCCCTTTTTATTGCCC
AGCTTGCAAGTCGTCCCTGCGTTTAAAAAGAGGAAAGATAAAAATACCTCACTTTGCGCACATATCTTTACAAAATTGTG
ATTCTTGGAGTGAAAGCGAATCTGCACAACATCTGGGTTTAAAACTTAGCTTATACCAATGGCTTAAGGAAAAAGAGAAA
GTAGAGCTAGAAAAATATGTGCCAGAGATTAAGCAAACGGCTGATTTGTTAGTGAATGATAAACTTGCCATCGAAATACA
GTGTTCGCCACTCTCTTTACAACGTTTAGAAGAGAGAACGGTAAGCTACAAAGAAAAGGGATATTATGTACTTTGGCTTC
AAGGAAGGGATTTGTGGCTCAAGAAGACCTTATCATCGCTACAGAAAAATTTGCTCTATTATTCAGTAGAGCGAGGTTTT
TACTTTTGGGAGTTAGATTGGGACAGAAAGAAGCTACGTTTAAAATCATTGATTCATCAGGATTTAAAAGGTCGACTGAT
ATGTCTTACGGAAGAGTTTGATTTTTTCCAAGAGAGTCTCTTAGAACTCTTACGTCAGCCTTTTCTCAAAGGAGAAAATC
TTAGTATAGATGTACCAGAGCAAGAAGAGTTACAGTTTTTTATTCAAAAACAACTGTATTATCAAGTGCCAAAATGGATT
AAAGTGCAAGAAAAATATTATGAACAGGGTAAAAATTTGTTAGATCTCAACTGGAAGAAATGTTACTGGGCACCTCCAGG
ACTAAACTTATTGACCTTTGACTTTATAAACGAAAGAAGTGAAAGTTTTTTTCAAGTGGATACTTCCTTAGAAAAATATT
ATCAAGGCTTCTACGAAAGTTTTCAGTCACAAGAACATGAAAGACTGCATACACCAAGCTACTATGCTATAATTAAAGAT
AAAAATAAAGTGAAAAACGGAGAATGGCATGGCAAAAAAACGTGA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(1-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Lactococcus lactis subsp. cremoris KW2

51.829

98.204

0.509
  coiA Streptococcus pneumoniae Rx1

42.073

98.204

0.413
  coiA Streptococcus pneumoniae D39

42.073

98.204

0.413
  coiA Streptococcus pneumoniae R6

42.073

98.204

0.413
  coiA Streptococcus pneumoniae TIGR4

41.768

98.204

0.41
  coiA Streptococcus mitis NCTC 12261

41.463

98.204

0.407

Multiple sequence alignment