Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L2Y96_RS01535 Genome accession   NZ_CP095741
Coordinates   330688..332187 (+) Length   499 a.a.
NCBI ID   WP_247331360.1    Uniprot ID   -
Organism   Luteibacter aegosomaticola strain 335     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 325688..337187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y96_RS01500 (L2Y96_01500) - 325794..326495 (+) 702 WP_247331348.1 YdcF family protein -
  L2Y96_RS01505 (L2Y96_01505) hemF 326586..327488 (+) 903 WP_247331349.1 oxygen-dependent coproporphyrinogen oxidase -
  L2Y96_RS01510 (L2Y96_01510) - 327514..328167 (-) 654 WP_247331351.1 hypothetical protein -
  L2Y96_RS01515 (L2Y96_01515) gpmA 328316..329056 (+) 741 WP_247331353.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  L2Y96_RS01520 (L2Y96_01520) - 329172..329723 (+) 552 WP_247331355.1 DUF1453 domain-containing protein -
  L2Y96_RS01525 (L2Y96_01525) glnK 329737..330075 (-) 339 WP_247331357.1 P-II family nitrogen regulator -
  L2Y96_RS01530 (L2Y96_01530) - 330254..330508 (+) 255 WP_247331359.1 accessory factor UbiK family protein -
  L2Y96_RS01535 (L2Y96_01535) comM 330688..332187 (+) 1500 WP_247331360.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L2Y96_RS01540 (L2Y96_01540) - 332337..332684 (+) 348 WP_247331362.1 GFA family protein -
  L2Y96_RS01545 (L2Y96_01545) - 332885..333478 (-) 594 WP_247331364.1 DUF6338 family protein -
  L2Y96_RS01550 (L2Y96_01550) - 333802..335589 (+) 1788 WP_247331366.1 sodium:proton antiporter -
  L2Y96_RS01555 (L2Y96_01555) aceA 335603..336892 (-) 1290 WP_247331368.1 isocitrate lyase -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 53437.13 Da        Isoelectric Point: 6.6132

>NTDB_id=677971 L2Y96_RS01535 WP_247331360.1 330688..332187(+) (comM) [Luteibacter aegosomaticola strain 335]
MSLAVTLSRAQEGVAAPQVVVEVHLSGGLPSTSIVGLPEAAVREARDRVRVAIQNTAFEYPSRRVTVNLAPAELPKDGGR
FDLAIALGILAAGSQVPRERLDDCEFLGELALSGELRPVPGILPALIRARRCGRRIVVPRANAAEAALIGEGDVLLADSL
AEVCAWLRGHGELTAAVSPDFDDVPPGGPDMRDVRGQHQARRALEIAAAGGHHLLLIGPPGTGKTMLAERLPGILPGMTE
SEALESCAIRSLAGETIDPAGWRRRPFRAPHHTASGPALVGGGSSPRPGEISLAHNGVLFLDELPEFSRHVLEVLREPLE
SGQIVISRAARQSTFPAEFQLVAAMNPCPCGFQGDPQHECRCTPDQVARYKAKISGPLLDRIDLCVEVPRVPIAELSTPR
GPHDDDSATVRKRVIAAREKALLRAGQPNSDLSVVNLERDCALPPAEREWLESALDKLGASARAYHRILRVARTIADIEG
GTGCVEQVHLAEAMHYRRF

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=677971 L2Y96_RS01535 WP_247331360.1 330688..332187(+) (comM) [Luteibacter aegosomaticola strain 335]
ATGAGTCTCGCCGTCACGCTATCGCGCGCGCAGGAAGGTGTCGCGGCGCCCCAGGTGGTCGTCGAAGTGCATCTCTCCGG
CGGCCTGCCGTCTACTTCCATCGTGGGCCTGCCCGAGGCAGCCGTCCGCGAGGCACGCGACCGTGTCCGCGTCGCCATCC
AGAACACCGCTTTCGAATACCCCAGCCGCCGGGTCACGGTGAACCTTGCCCCTGCCGAGCTGCCGAAAGACGGCGGCCGG
TTCGATCTGGCGATCGCCCTTGGCATCCTGGCCGCCGGCTCGCAGGTGCCTCGCGAACGCCTGGACGATTGTGAATTCCT
GGGTGAGCTGGCGCTCTCGGGCGAGTTGCGCCCGGTGCCGGGCATCCTGCCCGCCCTCATCCGCGCCCGCCGTTGCGGCC
GGCGCATCGTTGTCCCCCGCGCCAACGCCGCCGAAGCGGCGCTGATCGGCGAGGGCGATGTGCTGCTTGCCGACAGTCTG
GCCGAGGTCTGCGCCTGGTTGCGCGGCCATGGCGAACTCACGGCTGCCGTCTCGCCCGACTTTGATGACGTGCCACCCGG
TGGCCCGGACATGCGCGATGTGCGCGGCCAGCACCAGGCCCGCCGCGCGCTGGAAATCGCTGCCGCTGGCGGTCACCACC
TTCTTCTTATCGGGCCACCTGGCACGGGCAAGACCATGCTCGCCGAGCGGCTGCCGGGCATCCTTCCCGGCATGACGGAA
TCCGAGGCGCTGGAAAGCTGCGCCATCCGTTCGCTGGCCGGCGAAACGATCGATCCCGCAGGCTGGCGCCGCCGTCCGTT
CCGGGCGCCGCACCACACCGCCTCCGGCCCGGCGCTGGTCGGCGGGGGCTCTTCACCGCGCCCCGGTGAAATCTCGCTCG
CCCATAATGGCGTGCTCTTCCTCGACGAGCTGCCCGAGTTCAGCCGCCACGTGCTGGAAGTGCTGCGCGAGCCGCTCGAA
TCGGGGCAGATCGTCATTTCGCGTGCGGCCCGCCAGTCGACCTTCCCGGCGGAATTCCAGCTGGTCGCTGCGATGAACCC
GTGCCCGTGTGGCTTCCAGGGCGACCCGCAGCACGAATGCCGTTGCACGCCCGACCAGGTCGCGCGGTACAAAGCGAAGA
TCTCCGGGCCGCTGCTCGATCGCATCGATCTTTGCGTCGAAGTACCGCGTGTACCGATCGCTGAGCTTTCCACGCCGCGC
GGCCCGCACGATGACGACAGCGCCACGGTGCGCAAGCGCGTCATCGCCGCGCGCGAAAAGGCGCTGCTCCGGGCAGGCCA
GCCAAACTCGGATCTCAGTGTCGTGAACCTTGAGCGTGACTGTGCGCTGCCGCCCGCAGAGCGCGAATGGCTGGAGAGCG
CGCTCGACAAGTTGGGCGCATCGGCCCGTGCCTACCACCGCATCCTGCGCGTGGCACGCACCATCGCCGATATCGAAGGT
GGCACCGGCTGCGTCGAGCAGGTACATCTCGCCGAGGCGATGCACTACCGGCGGTTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.819

99.8

0.547
  comM Vibrio campbellii strain DS40M4

53.722

99.599

0.535
  comM Haemophilus influenzae Rd KW20

52.087

100

0.525
  comM Glaesserella parasuis strain SC1401

51.497

100

0.517
  comM Legionella pneumophila str. Paris

51.303

100

0.513
  comM Legionella pneumophila strain ERS1305867

51.303

100

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.378

99.8

0.443