Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L2Y94_RS01480 Genome accession   NZ_CP095740
Coordinates   335569..337071 (+) Length   500 a.a.
NCBI ID   WP_247372535.1    Uniprot ID   -
Organism   Luteibacter aegosomatis strain 321     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 330569..342071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y94_RS01450 (L2Y94_01450) hemF 331342..332244 (+) 903 WP_247372528.1 oxygen-dependent coproporphyrinogen oxidase -
  L2Y94_RS01455 (L2Y94_01455) - 332293..332940 (-) 648 WP_247372529.1 hypothetical protein -
  L2Y94_RS01460 (L2Y94_01460) gpmA 333212..333952 (+) 741 WP_247372531.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  L2Y94_RS01465 (L2Y94_01465) - 334058..334606 (+) 549 WP_247372533.1 DUF1453 domain-containing protein -
  L2Y94_RS01470 (L2Y94_01470) glnK 334612..334950 (-) 339 WP_144912813.1 P-II family nitrogen regulator -
  L2Y94_RS01475 (L2Y94_01475) - 335142..335396 (+) 255 WP_247375391.1 accessory factor UbiK family protein -
  L2Y94_RS01480 (L2Y94_01480) comM 335569..337071 (+) 1503 WP_247372535.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L2Y94_RS01485 (L2Y94_01485) - 337345..337869 (+) 525 WP_247372537.1 hypothetical protein -
  L2Y94_RS01490 (L2Y94_01490) aceA 338298..339587 (-) 1290 WP_247372538.1 isocitrate lyase -
  L2Y94_RS01495 (L2Y94_01495) aceB 339603..341198 (-) 1596 WP_247372540.1 malate synthase A -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 53469.08 Da        Isoelectric Point: 6.3721

>NTDB_id=677951 L2Y94_RS01480 WP_247372535.1 335569..337071(+) (comM) [Luteibacter aegosomatis strain 321]
MSLAVTLSRAQEGVAAPQVVVEVHLSGGLPSTSIVGLPEAAVREARDRVRVAIQSTAFEYPNRRVTVNLAPAELPKDGGR
FDLAIALGILAAGAQVPRERLDDCEFLGELALSGELRAVPGILPALIRARRCGRRVVVPRANAAEAALIGEADVLLADSL
ADVCAWLRGQGELDIPPSSTDFYDLPQGGPDMGDIRGQHQARRALEIAAAGGHHLLMIGPPGTGKTMLAERLPGILPSMT
ETEALESCAIRSLAGETIDPDGWRRRPFRAPHHTASGAALVGGGSTPRPGEISLAHNGVLFLDELPEFPRHVLDVLREPL
ESGQIVISRAARQSTFPAEFQLVAAMNPCPCGYSGDPQHACRCTPDQVQRYRSRISGPLLDRIDLCVEVPRVPISALLAA
ASPFDEDSATVRARVVNAREKALLRAGQSNAELSVVNLERDCALPPSEKTWLEAALDKLGASARAYHRILRVARTIADLE
GGAGCVEQQHLAEALHYRRF

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=677951 L2Y94_RS01480 WP_247372535.1 335569..337071(+) (comM) [Luteibacter aegosomatis strain 321]
ATGAGTCTCGCGGTCACTCTCTCGCGAGCCCAGGAAGGTGTCGCCGCGCCGCAGGTCGTGGTCGAAGTCCATCTCTCCGG
CGGCTTGCCCAGCACCTCCATCGTCGGGTTGCCCGAGGCGGCCGTGCGTGAAGCGCGCGACCGCGTGAGGGTGGCCATCC
AGAGCACCGCCTTCGAATACCCCAACCGCCGGGTCACGGTGAATCTCGCTCCGGCCGAGTTGCCCAAGGACGGCGGTCGC
TTCGACCTCGCCATCGCCTTGGGCATCCTGGCCGCCGGTGCCCAGGTGCCCAGGGAACGCCTGGACGACTGCGAATTCCT
CGGCGAGCTGGCCCTGTCGGGCGAGTTGCGCGCCGTGCCCGGCATCCTGCCCGCGCTGATCCGTGCCCGCCGCTGCGGCC
GTCGCGTGGTGGTGCCACGCGCCAACGCCGCCGAAGCCGCGCTCATCGGCGAAGCCGACGTGCTCCTGGCCGACAGCCTT
GCCGACGTATGCGCCTGGTTGCGCGGGCAGGGCGAGCTGGACATCCCGCCGTCGTCCACCGATTTCTACGACCTGCCGCA
GGGCGGCCCGGACATGGGCGACATCCGTGGCCAGCACCAGGCCCGTCGCGCCCTCGAGATCGCCGCCGCCGGCGGCCACC
ACCTGCTCATGATCGGCCCGCCCGGCACCGGCAAGACGATGCTGGCCGAACGCCTGCCGGGCATCCTGCCGTCGATGACC
GAAACCGAGGCGCTGGAGAGCTGCGCCATCCGTTCGTTGGCCGGCGAAACCATCGATCCCGACGGCTGGCGCCGAAGGCC
GTTTCGCGCGCCGCACCACACGGCGTCCGGCGCCGCATTGGTCGGCGGCGGTTCCACGCCGCGTCCCGGCGAGATTTCGC
TGGCCCACAACGGCGTGCTCTTCCTCGACGAACTGCCCGAGTTTCCCCGTCACGTGCTCGACGTGCTGCGCGAACCGCTC
GAGTCCGGCCAGATCGTGATCTCCCGCGCCGCGCGTCAATCGACGTTCCCCGCCGAATTCCAGCTCGTTGCCGCGATGAA
CCCGTGTCCCTGCGGTTATTCGGGCGATCCGCAACACGCATGCCGCTGCACGCCCGACCAGGTGCAGCGTTATCGCTCCC
GCATCTCCGGCCCGCTGCTCGACCGCATCGACCTTTGCGTGGAAGTGCCGCGCGTACCCATTTCCGCGCTGCTCGCCGCC
GCATCGCCGTTCGACGAGGACAGCGCGACGGTGCGCGCCCGCGTCGTCAACGCACGCGAAAAAGCCCTTCTGCGCGCTGG
CCAGAGCAACGCCGAACTCAGCGTCGTGAACCTCGAACGCGACTGCGCGCTGCCGCCATCCGAGAAGACCTGGCTGGAAG
CCGCCCTCGACAAGCTCGGCGCCTCCGCGCGCGCTTATCACCGCATCCTGCGCGTGGCTCGCACCATCGCCGACCTCGAA
GGGGGCGCGGGTTGCGTGGAGCAACAACATCTCGCCGAGGCATTGCACTACCGACGCTTCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(406-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.225

99.6

0.56
  comM Vibrio campbellii strain DS40M4

54.819

99.6

0.546
  comM Haemophilus influenzae Rd KW20

53.571

100

0.54
  comM Glaesserella parasuis strain SC1401

52.4

100

0.524
  comM Legionella pneumophila str. Paris

50.696

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.696

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.086

99.8

0.43