Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MWN52_RS17195 Genome accession   NZ_CP095475
Coordinates   3901728..3903242 (+) Length   504 a.a.
NCBI ID   WP_286575648.1    Uniprot ID   -
Organism   Pseudoxanthomonas winnipegensis strain ZSY-33     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3896728..3908242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWN52_RS17175 (MWN52_17195) - 3898864..3899523 (+) 660 WP_130535469.1 kinase -
  MWN52_RS17180 (MWN52_17200) - 3899969..3900685 (+) 717 WP_286575646.1 DUF998 domain-containing protein -
  MWN52_RS17185 (MWN52_17205) - 3900729..3901244 (+) 516 WP_286575647.1 GNAT family N-acetyltransferase -
  MWN52_RS17190 (MWN52_17210) - 3901438..3901692 (+) 255 WP_130521742.1 accessory factor UbiK family protein -
  MWN52_RS17195 (MWN52_17215) comM 3901728..3903242 (+) 1515 WP_286575648.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MWN52_RS17200 (MWN52_17220) - 3903499..3904509 (-) 1011 WP_286575649.1 DUF2884 family protein -
  MWN52_RS17205 (MWN52_17225) - 3904859..3905230 (-) 372 WP_286575650.1 hypothetical protein -
  MWN52_RS17210 (MWN52_17230) aceA 3905483..3906814 (-) 1332 WP_286575651.1 isocitrate lyase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 53638.58 Da        Isoelectric Point: 8.3066

>NTDB_id=677125 MWN52_RS17195 WP_286575648.1 3901728..3903242(+) (comM) [Pseudoxanthomonas winnipegensis strain ZSY-33]
MSLALVHSRARCGVQAPGVQVEVHLSGGLPATHIVGLPEAAVRESRDRVRAALLCAQFEFPARRITVNLAPADLPKDGGR
FDLPIALGILAASGQLDRQALAGWEFVGELGLTGELRSIDGVLPAVLAARDAGRRLIVPAGNGAEAALVATGQACTARTL
LEVCAMLCGTRAPAMAVAEPVTPWPVPDLRDVRGQLHARRALEVAAAGGHHLLFVGSPGCGKTLLASRLPGLLPEASEDE
ALESAVIASVSGRGLDPARWRQRPFRSPHHTASAVALIGGRALPRPGEVSLAHHGVLFLDELTEWDRRALEVLREPLESG
TVTVARAARSAEFPARFQLVAAMNPCPCGWAGDANGRCRCTAERIARYRGRISGPLLDRIDLQIDVARVPPQALRPDAPA
GEDSATVRERVTAARARQLQRAGVLNARLDQAQTLTHCRLAPPDQALLERAIDQMRLSARAMQRTLRVARTIADLAESED
ITTAHLTEALGYRQQAMAPHVDAA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=677125 MWN52_RS17195 WP_286575648.1 3901728..3903242(+) (comM) [Pseudoxanthomonas winnipegensis strain ZSY-33]
ATGAGTCTGGCCCTGGTCCATAGCCGGGCGCGCTGCGGCGTGCAGGCGCCTGGCGTGCAGGTCGAAGTGCATCTCTCCGG
CGGCCTGCCGGCCACGCACATCGTCGGCCTGCCCGAGGCGGCGGTGCGCGAGAGCCGCGACCGGGTGCGCGCGGCGCTGC
TGTGTGCGCAGTTCGAGTTCCCGGCGCGGCGCATCACCGTCAATCTGGCGCCGGCCGACCTGCCCAAGGACGGCGGCCGT
TTCGACCTGCCGATCGCGCTGGGCATCCTGGCGGCCAGCGGCCAGCTCGACCGCCAGGCCCTGGCCGGCTGGGAATTCGT
CGGCGAGCTGGGCCTGACCGGCGAGCTGCGCAGCATCGACGGCGTGCTGCCGGCGGTGCTGGCCGCGCGCGACGCGGGCC
GGCGCCTGATCGTGCCGGCGGGCAATGGCGCCGAGGCCGCGCTGGTGGCCACCGGCCAGGCCTGCACCGCGCGCACCCTG
CTGGAGGTCTGCGCCATGCTGTGCGGCACGCGCGCACCGGCGATGGCGGTGGCCGAGCCGGTCACGCCCTGGCCCGTGCC
GGACCTGCGCGATGTCCGCGGCCAGCTGCATGCGCGACGCGCACTGGAGGTCGCCGCGGCCGGCGGGCACCACCTTCTGT
TCGTCGGTTCGCCCGGCTGCGGCAAGACGCTGCTGGCCTCGCGCCTGCCCGGCCTGCTGCCCGAGGCCAGCGAGGACGAA
GCGCTGGAGAGCGCCGTCATCGCCTCTGTCAGCGGCCGCGGGCTGGACCCGGCGCGCTGGCGGCAGCGCCCGTTCCGCAG
TCCGCACCACACCGCCAGCGCGGTGGCGCTGATCGGCGGCCGCGCGCTGCCTCGACCCGGCGAGGTCTCACTGGCCCACC
ACGGCGTGCTGTTCCTCGATGAGCTGACCGAGTGGGACCGGCGTGCGCTGGAAGTGCTGCGCGAGCCGCTGGAGTCGGGC
ACGGTCACCGTCGCGCGCGCGGCGCGCAGCGCGGAGTTCCCCGCGCGGTTCCAACTGGTGGCCGCGATGAATCCCTGTCC
CTGCGGCTGGGCCGGCGATGCCAACGGCCGCTGCCGCTGCACGGCCGAGCGCATCGCCCGCTATCGCGGCCGCATCTCCG
GCCCGCTGCTGGACCGGATCGACCTGCAGATCGACGTCGCACGCGTGCCGCCGCAGGCCTTGCGCCCCGACGCACCGGCC
GGCGAAGACAGCGCCACCGTGCGCGAACGCGTCACCGCCGCCCGAGCGCGACAGCTGCAGCGCGCCGGCGTGCTCAATGC
GCGCCTGGATCAGGCGCAGACCCTCACCCATTGCCGGCTGGCACCGCCCGACCAGGCGCTGCTGGAGCGCGCGATCGATC
AGATGCGGCTGTCCGCACGCGCCATGCAGCGCACGCTGCGCGTGGCCCGTACCATCGCCGATCTGGCCGAAAGCGAAGAC
ATCACCACCGCGCATCTGACCGAAGCCCTGGGCTACCGCCAGCAGGCGATGGCGCCGCACGTCGATGCGGCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.2

99.206

0.528
  comM Vibrio cholerae strain A1552

53.131

98.214

0.522
  comM Glaesserella parasuis strain SC1401

51.896

99.405

0.516
  comM Vibrio campbellii strain DS40M4

52.525

98.214

0.516
  comM Legionella pneumophila str. Paris

49.412

100

0.5
  comM Legionella pneumophila strain ERS1305867

49.412

100

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.056

100

0.431