Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   MWN52_RS06790 Genome accession   NZ_CP095475
Coordinates   1528248..1529711 (-) Length   487 a.a.
NCBI ID   WP_286577171.1    Uniprot ID   -
Organism   Pseudoxanthomonas winnipegensis strain ZSY-33     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1523248..1534711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWN52_RS06770 (MWN52_06790) - 1523251..1524114 (-) 864 WP_130523577.1 A24 family peptidase -
  MWN52_RS06775 (MWN52_06795) pilC 1524118..1525380 (-) 1263 WP_286577167.1 type II secretion system F family protein Machinery gene
  MWN52_RS06780 (MWN52_06800) pilB 1525520..1527244 (-) 1725 WP_286577168.1 type IV-A pilus assembly ATPase PilB Machinery gene
  MWN52_RS06785 (MWN52_06805) pilA2 1527447..1527893 (-) 447 WP_286577169.1 pilin Machinery gene
  MWN52_RS06790 (MWN52_06810) pilR 1528248..1529711 (-) 1464 WP_286577171.1 sigma-54 dependent transcriptional regulator Regulator
  MWN52_RS06795 (MWN52_06815) - 1529802..1531430 (-) 1629 WP_286577172.1 PAS domain-containing sensor histidine kinase -
  MWN52_RS06800 (MWN52_06820) sucC 1531619..1532788 (+) 1170 WP_130519285.1 ADP-forming succinate--CoA ligase subunit beta -
  MWN52_RS06805 (MWN52_06825) sucD 1532812..1533687 (+) 876 WP_130519284.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 487 a.a.        Molecular weight: 52691.11 Da        Isoelectric Point: 6.6011

>NTDB_id=677118 MWN52_RS06790 WP_286577171.1 1528248..1529711(-) (pilR) [Pseudoxanthomonas winnipegensis strain ZSY-33]
MSDPRSALIVDDERDIRELLTLTLGRMGIRIDTAANLGEARALLARNAYDLCFTDMRLPDGNGIELVGEISRQFPKTPVA
MITAFGNVELAVEALKAGAFDFVSKPVDINVLRGLVKHALELNNVERPSPAPAPAQHAMRLLGESSAMRELRDTIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARSSGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKQGLFQAASGGTLFLD
EVAELPLPMQVKLLRAIQEKAVRPVGASGEIQVDVRILSATHKDLGELAHDGRFRHDLYYRINVIELRVPPLRERTGDLP
QLTGAILNRLAGSQGRPAPRLTPAAADALSQYAFPGNVRELENILERAMAMADEDAIDASDLRLPQGERRSAAAQPPAQS
PPPQDYDPFRSAPTPQFGQGLPSQAGASSAPTANEAEGPLPSYIEQMERAAIHKALEDNRWNKTKAAAQLGITFRALRYK
LKKLGIE

Nucleotide


Download         Length: 1464 bp        

>NTDB_id=677118 MWN52_RS06790 WP_286577171.1 1528248..1529711(-) (pilR) [Pseudoxanthomonas winnipegensis strain ZSY-33]
ATGAGCGACCCCCGAAGCGCCCTGATCGTCGATGACGAACGCGATATCCGCGAACTGCTGACCCTCACCCTGGGCCGCAT
GGGCATCCGCATCGACACCGCCGCCAACCTGGGCGAGGCGCGCGCGCTGCTGGCCCGCAATGCCTACGACCTGTGCTTCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTGGGCGAGATCTCGCGACAGTTCCCCAAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAATGTCGAACTGGCGGTGGAAGCGCTCAAGGCAGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCAACGTCCTGCGCGGCCTGGTCAAGCACGCGCTGGAACTCAACAATGTCGAACGCCCCTCGCCGGCGCCCGCGC
CGGCCCAGCACGCCATGCGCCTGCTGGGCGAGTCGTCGGCCATGCGCGAGCTGCGCGACACCATCGCCAAGGTCGCCCGC
AGCCAGGCGCCGGTCTACATCCTAGGAGAATCGGGCGTTGGCAAGGAGCTGGTAGCCCGTACGATTCATGAGCAGGGCGC
GCGCTCGTCCGGCCCCTTCGTGCCGGTCAACTGCGGCGCGATCCCCGCAGAGCTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCACGCCGACAAGCAGGGCCTGTTCCAGGCGGCCAGCGGGGGCACCCTGTTCCTGGAC
GAGGTGGCCGAACTCCCGCTGCCCATGCAGGTCAAGCTGCTGCGTGCCATCCAGGAGAAGGCCGTGCGCCCGGTCGGCGC
CTCGGGAGAGATCCAGGTCGACGTGCGTATCCTGTCGGCCACCCACAAGGACCTGGGCGAACTGGCCCACGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTACCCCCGCTGCGCGAACGCACCGGCGACCTGCCG
CAGCTGACCGGCGCCATCCTCAACCGGCTGGCAGGCAGCCAGGGACGCCCGGCCCCGCGCCTGACCCCAGCCGCGGCGGA
TGCGCTGTCGCAGTACGCCTTCCCTGGCAACGTCCGTGAGCTGGAGAACATCCTGGAGCGCGCCATGGCCATGGCCGACG
AGGACGCCATCGATGCCAGCGATCTGCGCCTGCCGCAGGGTGAGCGCCGATCTGCCGCGGCGCAGCCTCCCGCACAGTCC
CCGCCGCCCCAGGACTACGACCCGTTCCGTTCCGCACCCACGCCCCAGTTCGGCCAAGGCCTGCCGTCGCAAGCCGGCGC
CTCGTCCGCACCAACGGCCAATGAAGCCGAAGGCCCGCTCCCCTCCTACATCGAGCAGATGGAGCGCGCCGCCATTCACA
AGGCCCTGGAGGACAACCGCTGGAATAAGACCAAGGCTGCGGCCCAGCTCGGCATCACCTTCCGCGCCCTGCGCTACAAG
CTCAAGAAGCTCGGCATCGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Bacterial regulatory protein, Fis family (HTH_8)

(444-484)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.455

99.179

0.6
  pilR Acinetobacter baumannii strain A118

47.609

98.768

0.47