Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG445_RS44040 Genome accession   NZ_CP109470
Coordinates   10031647..10032318 (+) Length   223 a.a.
NCBI ID   WP_329528952.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01462     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 10026647..10037318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG445_RS44025 (OG445_44050) - 10026816..10028267 (-) 1452 WP_329528949.1 DUF488 family protein -
  OG445_RS44030 (OG445_44060) dxs 10028621..10030513 (-) 1893 WP_329528950.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OG445_RS44035 (OG445_44065) - 10030885..10031307 (+) 423 WP_329528951.1 MarR family winged helix-turn-helix transcriptional regulator -
  OG445_RS44040 (OG445_44070) dinR/lexA 10031647..10032318 (+) 672 WP_329528952.1 transcriptional repressor LexA Regulator
  OG445_RS44045 (OG445_44075) - 10032535..10033461 (-) 927 WP_329528953.1 AraC family transcriptional regulator -
  OG445_RS44050 (OG445_44080) - 10033602..10034198 (+) 597 WP_168525485.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  OG445_RS44055 (OG445_44085) - 10034231..10035643 (+) 1413 WP_329528954.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  OG445_RS44060 (OG445_44090) - 10035710..10035952 (+) 243 WP_168525481.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  OG445_RS44065 (OG445_44095) - 10035960..10036925 (-) 966 WP_329528955.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23969.31 Da        Isoelectric Point: 5.7530

>NTDB_id=677024 OG445_RS44040 WP_329528952.1 10031647..10032318(+) (dinR/lexA) [Streptomyces sp. NBC_01462]
MENSAPARRGRPPGTRNAGGELTSRQSAIVGYITETVGRQGYPPSMREIGQAVNLSSTSSVAHQLMALERKGVLYRDPHR
PRAYRVRPSWAPDLGSLSQAPVEVPLVGRIAAGAPLLAEEMVEDVYSLPRQIVGDGDLFALTVSGDSMIDAAICDGDIVT
VRRQDSADHGDIVAALLGDEATIKVLLRQDGRVWLMPRNPSYEPIPGDEAQILGKVVGVLRLL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=677024 OG445_RS44040 WP_329528952.1 10031647..10032318(+) (dinR/lexA) [Streptomyces sp. NBC_01462]
ATGGAGAACAGCGCGCCCGCACGCCGAGGCCGTCCGCCGGGCACCCGGAACGCCGGGGGCGAGCTGACGAGCCGCCAGTC
GGCCATCGTCGGCTACATCACCGAGACGGTCGGGCGCCAGGGCTACCCGCCGTCGATGCGGGAGATCGGCCAGGCCGTCA
ACCTCTCCAGCACCTCCTCGGTCGCCCACCAGCTGATGGCTCTCGAACGCAAGGGCGTCCTCTACCGCGACCCGCACCGT
CCCCGCGCCTACCGCGTGCGGCCCTCGTGGGCGCCCGACCTGGGCAGTCTGAGCCAGGCGCCGGTCGAGGTGCCCCTCGT
AGGGCGGATCGCCGCGGGAGCACCCCTGCTCGCGGAGGAGATGGTCGAGGACGTCTACTCCCTGCCCCGCCAGATCGTCG
GCGACGGTGACCTGTTCGCTCTGACGGTCTCCGGTGACTCCATGATCGACGCGGCGATCTGCGACGGTGACATCGTGACC
GTCAGACGCCAGGACAGCGCCGACCACGGAGACATCGTCGCCGCGCTCCTCGGGGACGAGGCCACCATCAAGGTGCTGCT
CCGCCAGGACGGCCGGGTGTGGCTCATGCCCCGAAACCCGTCCTACGAGCCGATCCCCGGCGATGAAGCGCAGATCCTCG
GCAAGGTCGTCGGCGTCCTGCGCCTGCTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

42.857

91.031

0.39