Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG488_RS02795 Genome accession   NZ_CP109473
Coordinates   613874..614893 (+) Length   339 a.a.
NCBI ID   WP_329225569.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01460     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 608874..619893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG488_RS02785 (OG488_02780) - 610340..612691 (+) 2352 WP_329225565.1 AbfB domain-containing protein -
  OG488_RS02790 (OG488_02785) - 612830..613660 (-) 831 WP_329225567.1 phytanoyl-CoA dioxygenase family protein -
  OG488_RS02795 (OG488_02790) cytR 613874..614893 (+) 1020 WP_329225569.1 LacI family DNA-binding transcriptional regulator Regulator
  OG488_RS02800 (OG488_02795) - 615002..615547 (-) 546 WP_329225571.1 hypothetical protein -
  OG488_RS02805 (OG488_02800) - 615725..619006 (-) 3282 WP_329238373.1 LamG-like jellyroll fold domain-containing protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 35752.83 Da        Isoelectric Point: 6.2416

>NTDB_id=677027 OG488_RS02795 WP_329225569.1 613874..614893(+) (cytR) [Streptomyces sp. NBC_01460]
MAARLKDVAALAGVSVRTVSNVVSNAAAVAPATRARVMAAVEELGYRPNLAARNLRQGRTGLIGVVVPEIHSPYFGALAG
LLIDAAQERGWTVLLERTGGRPELERRLLDGSGGHQLDGMIISPWSTSPADLASLAGGLPLVVLGELEPDGTIDHVALDN
VGAARDAARHLVARGRRRIAAIGLQSGLGHGTAELRAEGFRHGLREAGLSPVAEVEVADLHRAEGARALRHLLELPEPPD
AVFCFSDELALGALRVAAEQGVRVPEDLALMGFDDIEDGRFAAPSLTTVAPDREQIAERAVQCLTERVFGRLDTLPARRI
VVPHRVLGRESTGAAVPPA

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=677027 OG488_RS02795 WP_329225569.1 613874..614893(+) (cytR) [Streptomyces sp. NBC_01460]
GTGGCAGCGAGACTCAAGGACGTCGCCGCGCTCGCCGGCGTGTCCGTCCGGACCGTCTCCAACGTGGTGAGCAATGCCGC
GGCCGTGGCCCCGGCGACGCGCGCCCGGGTCATGGCGGCGGTGGAGGAACTCGGCTACCGCCCCAACCTCGCCGCCCGCA
ACCTCCGGCAGGGGCGCACGGGTCTCATCGGTGTGGTCGTGCCCGAGATCCACTCCCCCTACTTCGGCGCGCTGGCCGGT
CTCCTCATCGACGCGGCACAGGAGCGCGGCTGGACGGTGCTCCTGGAGCGGACCGGGGGGCGTCCCGAGCTGGAACGGCG
GCTCCTCGACGGGTCCGGGGGGCACCAGCTCGACGGGATGATCATCAGCCCCTGGTCCACCTCCCCGGCCGATCTGGCCT
CACTCGCCGGGGGTCTGCCGCTGGTGGTCCTGGGCGAGCTGGAGCCGGACGGGACCATCGACCATGTCGCCCTGGACAAC
GTGGGGGCGGCCAGGGACGCCGCACGCCATCTGGTCGCGCGGGGCCGCCGGCGCATCGCGGCGATCGGCCTGCAGTCCGG
ACTGGGCCACGGCACGGCGGAACTGCGCGCGGAGGGGTTCCGTCACGGGCTGCGGGAGGCCGGCCTGAGCCCGGTGGCCG
AGGTGGAGGTGGCCGACCTCCACCGGGCGGAGGGGGCGCGGGCTCTGCGTCACCTGCTGGAGCTGCCCGAGCCGCCCGAC
GCCGTCTTCTGCTTCAGCGACGAGCTCGCCCTCGGTGCACTGCGCGTCGCGGCCGAACAGGGCGTGCGGGTGCCGGAGGA
CCTGGCGCTGATGGGGTTCGACGACATCGAGGACGGCAGATTCGCCGCCCCGTCCCTCACCACGGTCGCCCCGGACCGGG
AGCAGATCGCCGAGCGGGCGGTGCAGTGCCTGACCGAGCGCGTCTTCGGACGCCTCGACACCCTGCCCGCACGGCGGATC
GTGGTCCCGCACCGTGTGCTGGGGCGCGAGAGCACCGGAGCCGCCGTCCCACCGGCGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.209

100

0.378