Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CB4_RS02005 Genome accession   NZ_AP017312
Coordinates   369075..369563 (+) Length   162 a.a.
NCBI ID   WP_172890747.1    Uniprot ID   A0A0U5AVR6
Organism   Aneurinibacillus soli strain CB4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 364075..374563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CB4_RS01970 (CB4_00396) - 364076..364810 (+) 735 WP_096463343.1 DUF554 domain-containing protein -
  CB4_RS01975 (CB4_00397) yyaC 364879..365517 (-) 639 WP_096463344.1 spore protease YyaC -
  CB4_RS01980 (CB4_00398) - 365733..365993 (+) 261 WP_096463345.1 DUF3343 domain-containing protein -
  CB4_RS01985 (CB4_00399) - 366016..366942 (+) 927 WP_096463346.1 mechanosensitive ion channel family protein -
  CB4_RS01990 (CB4_00400) - 366955..367158 (+) 204 WP_096463347.1 DUF951 domain-containing protein -
  CB4_RS20780 (CB4_00401) - 367210..367353 (-) 144 WP_157737760.1 hypothetical protein -
  CB4_RS01995 (CB4_00402) ychF 367459..368565 (+) 1107 WP_096463348.1 redox-regulated ATPase YchF -
  CB4_RS02000 (CB4_00403) rpsF 368755..369045 (+) 291 WP_096463349.1 30S ribosomal protein S6 -
  CB4_RS02005 (CB4_00404) ssbA 369075..369563 (+) 489 WP_172890747.1 single-stranded DNA-binding protein Machinery gene
  CB4_RS02010 (CB4_00405) rpsR 369603..369833 (+) 231 WP_096463351.1 30S ribosomal protein S18 -
  CB4_RS02015 (CB4_00406) - 369927..370922 (+) 996 WP_096463352.1 YybS family protein -
  CB4_RS02020 (CB4_00407) - 370937..372898 (+) 1962 WP_096463353.1 DHH family phosphoesterase -
  CB4_RS02025 (CB4_00408) rplI 372895..373338 (+) 444 WP_096463354.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17781.60 Da        Isoelectric Point: 4.9909

>NTDB_id=67659 CB4_RS02005 WP_172890747.1 369075..369563(+) (ssbA) [Aneurinibacillus soli strain CB4]
MLNRAILLGRLTKDPELRYTQNGTAVATFSLAVDRRTTNQQGERETDFLNIVVWSKLAELCAQYLKKGRQAAVEGRIQTR
NYENKEGRRVYVTEIVAENVQFIGGQGQGQGGSGFQDEPYSGGGFGQAPSSGGGSRSRDAFNDNPFADTQKPIDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=67659 CB4_RS02005 WP_172890747.1 369075..369563(+) (ssbA) [Aneurinibacillus soli strain CB4]
GTGTTGAATCGAGCGATATTGCTAGGTCGTTTAACGAAAGATCCGGAATTGCGCTACACGCAGAACGGAACAGCTGTAGC
AACATTTTCACTGGCTGTAGACCGGAGAACGACTAACCAGCAGGGTGAAAGAGAAACCGATTTTCTCAACATCGTAGTCT
GGAGCAAGCTGGCTGAGCTTTGTGCCCAGTATTTGAAGAAAGGCCGTCAGGCAGCTGTCGAGGGCCGGATTCAAACACGC
AACTATGAGAATAAGGAAGGCCGACGCGTCTATGTCACAGAGATTGTGGCAGAGAATGTACAGTTCATTGGTGGACAAGG
TCAGGGCCAGGGTGGTTCAGGCTTTCAGGATGAGCCGTACAGTGGCGGCGGATTTGGTCAAGCTCCTTCCTCTGGTGGCG
GCAGCCGTTCGCGTGATGCCTTCAATGATAATCCCTTTGCTGATACTCAAAAACCGATTGATATCTCGGATGATGATCTA
CCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U5AVR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.371

100

0.586
  ssb Latilactobacillus sakei subsp. sakei 23K

47.953

100

0.506
  ssb Neisseria meningitidis MC58

35.714

100

0.401
  ssb Neisseria gonorrhoeae MS11

35.165

100

0.395
  ssb Glaesserella parasuis strain SC1401

35.028

100

0.383

Multiple sequence alignment