Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   MRL81_RS00120 Genome accession   NZ_CP095369
Coordinates   24397..25917 (-) Length   506 a.a.
NCBI ID   WP_286552051.1    Uniprot ID   -
Organism   Citrobacter portucalensis strain 19MO02SH04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 19397..30917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRL81_RS00110 (MRL81_00110) hdfR 23082..23927 (-) 846 WP_008787063.1 HTH-type transcriptional regulator HdfR -
  MRL81_RS00115 (MRL81_00115) maoP 24034..24372 (+) 339 WP_003018025.1 macrodomain Ori organization protein MaoP -
  MRL81_RS00120 (MRL81_00120) comM 24397..25917 (-) 1521 WP_286552051.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  MRL81_RS00125 (MRL81_00125) ilvL 26270..26368 (+) 99 WP_001311244.1 ilv operon leader peptide -
  MRL81_RS00130 (MRL81_00130) ilvG 26508..28154 (+) 1647 WP_286552054.1 acetolactate synthase 2 catalytic subunit -
  MRL81_RS00135 (MRL81_00135) ilvM 28151..28414 (+) 264 WP_003018017.1 acetolactate synthase 2 small subunit -
  MRL81_RS00140 (MRL81_00140) - 28432..29361 (+) 930 WP_003829030.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55106.04 Da        Isoelectric Point: 7.2885

>NTDB_id=676532 MRL81_RS00120 WP_286552051.1 24397..25917(-) (comM) [Citrobacter portucalensis strain 19MO02SH04]
MSLSIVHTRAALGVNAPAITIEVHISNGLPGLTMVGLPETTVKEARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGR
YDLPIAVALLAASEQLTTHNLDTYELVGELALTGALRGVPGAISSATEAIRAGRRIIVAKENAAEVGLIHGEGCLIADHL
QAVCAFLEGKHDLDRPSSADFTPCALADDLSDVIGQEQGKRGLELTAAGGHNLLLIGPPGTGKTMLASRLRGLLPPLSND
EALESAAILSLVNSDTLQKQWKQRPFRSPHHSASLTAMVGGGSIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSQSQIKG
EDSATVKQRVMAARERQYRRQNKLNAHLDSQDIHKYCPLRSDDAQWLEETLAHLGLSIRAWLRLIKVARTIADIEQSDHI
SRQHLQEAVGYRAIDRLLIHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=676532 MRL81_RS00120 WP_286552051.1 24397..25917(-) (comM) [Citrobacter portucalensis strain 19MO02SH04]
ATGTCACTATCGATTGTTCACACACGCGCTGCGCTGGGCGTGAATGCGCCAGCCATTACCATCGAAGTACATATCAGTAA
TGGTTTGCCTGGTTTAACCATGGTGGGATTACCCGAAACAACGGTAAAAGAGGCTCGCGATCGAGTTCGCAGTGCGATTA
TTAATAGCGGTTATGAATTCCCGGCGAAGAAGATAACCATAAACCTCGCTCCGGCCGATCTCCCGAAAGAAGGGGGACGA
TATGATTTACCTATCGCAGTTGCGCTTCTGGCTGCGTCTGAGCAGCTTACAACCCATAACCTCGATACATATGAGCTGGT
AGGCGAATTAGCGCTTACAGGCGCGTTACGCGGCGTTCCCGGTGCGATATCAAGTGCAACTGAAGCTATTCGCGCAGGCA
GGAGAATTATTGTCGCAAAAGAGAATGCAGCTGAAGTGGGACTGATACACGGTGAAGGGTGCCTGATAGCCGATCATCTA
CAGGCTGTATGCGCATTTCTCGAAGGTAAGCATGATTTAGACAGACCATCATCGGCAGATTTTACCCCCTGCGCATTAGC
AGATGATCTGAGCGATGTTATCGGCCAGGAACAGGGTAAACGCGGACTGGAACTTACCGCAGCTGGCGGTCATAACCTCT
TACTCATCGGGCCGCCGGGAACGGGTAAGACCATGCTGGCCAGTCGCCTGAGAGGATTGCTTCCGCCACTGAGCAATGAT
GAAGCACTGGAAAGCGCCGCGATTCTAAGTCTGGTCAATTCCGACACGCTACAAAAACAGTGGAAACAACGCCCTTTTCG
TTCGCCGCATCACAGTGCTTCATTAACTGCCATGGTCGGTGGAGGCTCTATTCCTGCGCCAGGCGAGATATCTCTGGCGC
ATAACGGCATACTGTTTCTGGATGAACTTCCCGAGTTTGAGCGGCGCACGCTGGATGCACTGCGAGAGCCCATTGAGTCC
GGGCAGATTCATTTATCCCGCACTCGGGCAAAAATAACTTACCCCGCGCGTTTTCAGCTTATTGCTGCCATGAATCCCAG
CCCAACAGGACATTATCAGGGGAACCATAACCGCTGTACCCCAGAGCAGACACTACGCTACCTCAATCGATTATCAGGTC
CATTTCTTGACCGCTTCGATCTCTCCCTCGAAATCCCCTTACCGCCGCCCGGCATACTCAGCCAGAGCCAGATAAAAGGG
GAAGATAGCGCAACGGTGAAGCAACGCGTTATGGCAGCACGAGAGCGTCAGTATCGGCGGCAGAATAAGTTAAATGCGCA
CCTGGACAGTCAGGATATCCATAAATACTGTCCATTGCGTAGCGACGATGCGCAGTGGCTTGAAGAAACGCTCGCGCATC
TCGGATTATCCATCCGCGCCTGGTTACGCCTGATAAAGGTCGCTCGAACGATCGCGGATATAGAACAATCTGACCATATA
TCTCGCCAGCACTTACAGGAGGCTGTTGGGTATCGGGCGATAGACAGATTACTCATTCATTTGCAGAAACTACTGGCATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Vibrio campbellii strain DS40M4

58.333

99.605

0.581
  comM Haemophilus influenzae Rd KW20

57.451

100

0.579
  comM Glaesserella parasuis strain SC1401

57.677

100

0.579
  comM Legionella pneumophila str. Paris

47.211

99.209

0.468
  comM Legionella pneumophila strain ERS1305867

47.211

99.209

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.659

99.605

0.425